Evidence map›Paper›PMID 34285307›Full record

ArticleScientific reports2021

Comparative transcriptomic analysis of two Saccharopolyspora spinosa strains reveals the relationships between primary metabolism and spinosad production.

Yunpeng Zhang, Xiaomeng Liu, Tie Yin, Qi Li, Qiulong Zou, Kexue Huang, Dongsheng Guo, Xiaolin Zhang

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.3field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yunpeng Zhang *Beijing Key Laboratory of Nutrition and Health and Food Safety, Nutrition and Health Research Institute, COFCO, Beijing, 102209, People's Republic of China.
Xiaomeng Liu *Beijing Key Laboratory of Nutrition and Health and Food Safety, Nutrition and Health Research Institute, COFCO, Beijing, 102209, People's Republic of China.
Tie YinBeijing Key Laboratory of Nutrition and Health and Food Safety, Nutrition and Health Research Institute, COFCO, Beijing, 102209, People's Republic of China.
Qi LiBeijing Key Laboratory of Nutrition and Health and Food Safety, Nutrition and Health Research Institute, COFCO, Beijing, 102209, People's Republic of China.
Qiulong ZouBeijing Key Laboratory of Nutrition and Health and Food Safety, Nutrition and Health Research Institute, COFCO, Beijing, 102209, People's Republic of China.
Kexue HuangQilu Pharmaceutical (Inner Mongolia) Co., Ltd., Hohhot, 010020, Inner Mongolia, People's Republic of China.
Dongsheng GuoSchool of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing, 210024, Jiangsu, People's Republic of China.
Xiaolin ZhangBeijing Key Laboratory of Nutrition and Health and Food Safety, Nutrition and Health Research Institute, COFCO, Beijing, 102209, People's Republic of China. zhangxiaolin1@cofco.com.
Nanjing Normal University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Saccharopolyspora spinosa is a well-known actinomycete for producing the secondary metabolites, spinosad, which is a potent insecticides possessing both efficiency and safety. In the previous researches, great efforts, including physical mutagenesis, fermentation optimization, genetic manipulation and other methods, have been employed to increase the yield of spinosad to hundreds of folds from the low-yield strain. However, the metabolic network in S. spinosa still remained un-revealed. In this study, two S. spinosa strains with different spinosad production capability were fermented and sampled at three fermentation periods. Then the total RNA of these samples was isolated and sequenced to construct the transcriptome libraries. Through transcriptomic analysis, large numbers of differentially expressed genes were identified and classified according to their different functions. According to the results, spnI and spnP were suggested as the bottleneck during spinosad biosynthesis. Primary metabolic pathways such as carbon metabolic pathways exhibited close relationship with spinosad formation, as pyruvate and phosphoenolpyruvic acid were suggested to accumulate in spinosad high-yield strain during fermentation. The addition of soybean oil in the fermentation medium activated the lipid metabolism pathway, enhancing spinosad production. Glutamic acid and aspartic acid were suggested to be the most important amino acids and might participate in spinosad biosynthesis.

Indexed as

Bacterial ProteinsBiosynthetic PathwaysCulture MediaDrug CombinationsFermentationGene Expression ProfilingGene Expression Regulation, BacterialHigh-Throughput Nucleotide SequencingLipid MetabolismMacrolidesSaccharopolysporaSoybean OilBacterial ProteinsCulture MediaDrug CombinationsMacrolidesSoybean Oilspinosad

Identifiers

PMID34285307
PMCPMC8292330
OpenAlexW3184616622

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.