Evidence map›Paper›PMID 34285256›Full record

ArticleScientific reports2021

Altered expression of genes controlling metabolism characterizes the tissue response to immune injury in lupus.

Kathryn M Kingsmore, Prathyusha Bachali, Michelle D Catalina, Andrea R Daamen, Sarah E Heuer, Robert D Robl, Amrie C Grammer, Peter E Lipsky

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 38 citations in OpenAlex.

  1. Trial
  2. Resetting immunometabolic set points in autoimmune disease.Journal of translational autoimmunity · 2026
    Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Immunometabolism in systemic lupus erythematosus.Nature reviews. Rheumatology · 2025
    Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Pretransplant kidney transcriptome captures intrinsic donor organ quality and predicts 24-month outcomes.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Kathryn M KingsmoreAMPEL BioSolutions, LLC and RILITE Research Institute, Charlottesville, VA, USA. kathryn.allison@ampelbiosolutions.com.
Prathyusha BachaliAMPEL BioSolutions, LLC and RILITE Research Institute, Charlottesville, VA, USA.
Michelle D CatalinaAMPEL BioSolutions, LLC and RILITE Research Institute, Charlottesville, VA, USA.
Andrea R DaamenAMPEL BioSolutions, LLC and RILITE Research Institute, Charlottesville, VA, USA.
Sarah E HeuerAMPEL BioSolutions, LLC and RILITE Research Institute, Charlottesville, VA, USA.
Robert D RoblAMPEL BioSolutions, LLC and RILITE Research Institute, Charlottesville, VA, USA.
Amrie C Grammer *AMPEL BioSolutions, LLC and RILITE Research Institute, Charlottesville, VA, USA.
Peter E Lipsky *AMPEL BioSolutions, LLC and RILITE Research Institute, Charlottesville, VA, USA.
Ampel BioSolutions (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To compare lupus pathogenesis in disparate tissues, we analyzed gene expression profiles of human discoid lupus erythematosus (DLE) and lupus nephritis (LN). We found common increases in myeloid cell-defining gene sets and decreases in genes controlling glucose and lipid metabolism in lupus-affected skin and kidney. Regression models in DLE indicated increased glycolysis was correlated with keratinocyte, endothelial, and inflammatory cell transcripts, and decreased tricarboxylic (TCA) cycle genes were correlated with the keratinocyte signature. In LN, regression models demonstrated decreased glycolysis and TCA cycle genes were correlated with increased endothelial or decreased kidney cell transcripts, respectively. Less severe glomerular LN exhibited similar alterations in metabolism and tissue cell transcripts before monocyte/myeloid cell infiltration in some patients. Additionally, changes to mitochondrial and peroxisomal transcripts were associated with specific cells rather than global signal changes. Examination of murine LN gene expression demonstrated metabolic changes were not driven by acute exposure to type I interferon and could be restored after immunosuppression. Finally, expression of HAVCR1, a tubule damage marker, was negatively correlated with the TCA cycle signature in LN models. These results indicate that altered metabolic dysfunction is a common, reversible change in lupus-affected tissues and appears to reflect damage downstream of immunologic processes.

Indexed as

Gene Regulatory NetworksAnimalsCitric Acid CycleDatabases, GeneticDisease Models, AnimalFemaleGene Expression ProfilingGene Expression RegulationGlucoseGlycolysisHumansInterferon Type ILipid MetabolismLupus Erythematosus, DiscoidLupus NephritisMiceGlucoseInterferon Type I

Identifiers

PMID34285256
PMCPMC8292402
OpenAlexW3184541283

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.