Evidence map›Paper›PMID 34283174›Full record

ArticleBlood advances2021

A polygenic score for acute vaso-occlusive pain in pediatric sickle cell disease.

Evadnie Rampersaud, Guolian Kang, Lance E Palmer, Sara R Rashkin, Shuoguo Wang, Wenjian Bi, Nicole M Alberts, Doralina Anghelescu, Martha Barton, Kirby Birch and 33 more

Open access · goldAbstract read
In one paragraph

Article in Blood advances, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 2 pooled it
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 2 syntheses or guidelines pooled it, 25 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  7. Review
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  9. Observational
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  12. Observational
  13. Article
  14. Transcriptional regulators of fetal hemoglobin.Hematology, transfusion and cell therapy · 2024
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Fetal hemoglobin modulates neurocognitive performance in sickle cell anemiaCurrent research in translational medicine · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

43 authors at 9 institutions in 3 countries.

Evadnie RampersaudDepartment of Computational Biology.
Guolian KangDepartment of Biostatistics.ORCID 0000-0002-6102-0115
Lance E PalmerDepartment of Computational Biology.ORCID 0000-0002-2519-8602
Sara R RashkinDepartment of Hematology.ORCID 0000-0001-5542-6891
Shuoguo WangDepartment of Computational Biology.
Wenjian BiDepartment of Biostatistics.
Nicole M AlbertsDepartment of Psychology, Concordia University, Montreal, Canada.
Doralina AnghelescuDepartment of Anesthesiology, St. Jude Children's Research Hospital, Memphis, TN.
Martha BartonDepartment of Hematology.
Kirby BirchDepartment of Computational Biology.
Nidal BoulosDepartment of Hematology.
Amanda M BrandowSection of Hematology/Oncology/Bone Marrow Transplantation, Department of Pediatrics, Medical College of Wisconsin, Milwaukee, WI.
Russell John BrookeDepartment of Epidemiology and Cancer Control, St. Jude Children's Research Hospital, Memphis, TN.ORCID 0000-0001-7115-2990
Ti-Cheng ChangDepartment of Computational Biology.
Wenan ChenDepartment of Computational Biology.
Yong ChengDepartment of Hematology.ORCID 0000-0002-9314-0971
Juan DingDepartment of Biostatistics.ORCID 0000-0002-9981-6530
John EastonDepartment of Computational Biology.ORCID 0000-0003-4503-6608
Jason R HodgesDepartment of Hematology.ORCID 0000-0002-7418-6632
Celeste K KanneSchool of Public Health, The University of Texas Health Science Center-Houston (UTHealth), Houston, TX.
Shawn LevyHudsonAlpha Institute for Biotechnology, Huntsville, AL.
Heather MulderDepartment of Computational Biology.
Ashwin P PatelSchool of Public Health, The University of Texas Health Science Center-Houston (UTHealth), Houston, TX.ORCID 0000-0003-0075-3304
Latika PuriDepartment of Hematology.ORCID 0000-0002-0429-0047
Celeste RosencranceDepartment of Computational Biology.ORCID 0000-0001-7898-233X
Michael RuschDepartment of Computational Biology.ORCID 0000-0002-5363-1848
Yadav SapkotaDepartment of Epidemiology and Cancer Control, St. Jude Children's Research Hospital, Memphis, TN.
Edgar SiosonDepartment of Computational Biology.ORCID 0000-0002-7540-8516
Akshay SharmaDepartment of Bone Marrow Transplantation and Cellular Therapy, St. Jude Children's Research Hospital, Memphis, TN.ORCID 0000-0003-3281-2081
Xing TangDepartment of Hematology.ORCID 0000-0001-5570-2155
Andrew ThrasherDepartment of Computational Biology.
Winfred WangDepartment of Hematology.
Yu YaoDepartment of Hematology.
Yutaka YasuiDepartment of Epidemiology and Cancer Control, St. Jude Children's Research Hospital, Memphis, TN.
Donald YergeauDepartment of Computational Biology.
Jane S HankinsDepartment of Hematology.ORCID 0000-0003-4439-7321
Vivien A SheehanDepartment of Pediatrics, Emory University School of Medicine, Children's Healthcare of Atlanta, Atlanta, GA.ORCID 0000-0003-2837-2255
James R DowningDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN; and.
Jeremie H EsteppDepartment of Hematology.ORCID 0000-0002-2257-0421
Jinghui ZhangDepartment of Computational Biology.
Michael DeBaunVanderbilt University Children's Hospital, Nashville, TN.ORCID 0000-0002-0574-1604
Gang WuDepartment of Computational Biology.
Mitchell J WeissDepartment of Hematology.
St. Jude Children's Research Hospital · USCancer Research And Biostatistics · USThe University of Texas Health Science Center at Houston · USConcordia University · CAEmory University · USHudsonAlpha Institute for Biotechnology · USInstitute of Bioinformatics and Applied Biotechnology · INMedical College of Wisconsin · USMonroe Carell Jr. Children's Hospital · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
NCI NIH HHS P30 CA021765
6 · The paper itself

Abstract

Individuals with monogenic disorders can experience variable phenotypes that are influenced by genetic variation. To investigate this in sickle cell disease (SCD), we performed whole-genome sequencing (WGS) of 722 individuals with hemoglobin HbSS or HbSβ0-thalassemia from Baylor College of Medicine and from the St. Jude Children's Research Hospital Sickle Cell Clinical Research and Intervention Program (SCCRIP) longitudinal cohort study. We developed pipelines to identify genetic variants that modulate sickle hemoglobin polymerization in red blood cells and combined these with pain-associated variants to build a polygenic score (PGS) for acute vaso-occlusive pain (VOP). Overall, we interrogated the α-thalassemia deletion -α3.7 and 133 candidate single-nucleotide polymorphisms (SNPs) across 66 genes for associations with VOP in 327 SCCRIP participants followed longitudinally over 6 years. Twenty-one SNPs in 9 loci were associated with VOP, including 3 (BCL11A, MYB, and the β-like globin gene cluster) that regulate erythrocyte fetal hemoglobin (HbF) levels and 6 (COMT, TBC1D1, KCNJ6, FAAH, NR3C1, and IL1A) that were associated previously with various pain syndromes. An unweighted PGS integrating all 21 SNPs was associated with the VOP event rate (estimate, 0.35; standard error, 0.04; P = 5.9 × 10-14) and VOP event occurrence (estimate, 0.42; standard error, 0.06; P = 4.1 × 10-13). These associations were stronger than those of any single locus. Our findings provide insights into the genetic modulation of VOP in children with SCD. More generally, we demonstrate the utility of WGS for investigating genetic contributions to the variable expression of SCD-associated morbidities.

Indexed as

Anemia, Sickle CellFetal HemoglobinChildHumansLongitudinal StudiesPainPolymorphism, Single NucleotideFetal Hemoglobin

Identifiers

PMID34283174
PMCPMC8341359
OpenAlexW3186414440

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.