Evidence map›Paper›PMID 34282932›Full record

ArticlemSystems2021

Forming Consensus To Advance Urobiome Research.

Linda Brubaker, Jean-Philippe F Gourdine, Nazema Y Siddiqui, Amanda Holland, Thomas Halverson, Roberto Limeria, David Pride, Lenore Ackerman, Catherine S Forster, Kristin M Jacobs and 7 more

Abstract read
In one paragraph

Article in mSystems, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Observational
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Linda BrubakerDepartment of Obstetrics, Gynecology and Reproductive Sciences, Division of Female Pelvic Medicine and Reconstructive Surgery, University of California, San Diego, San Diego, California, USA.
Jean-Philippe F GourdineOregon Clinical & Translational Research Institute (OCTRI), Oregon Health & Science University, Portland, Oregon, USA.
Nazema Y SiddiquiDepartment of Obstetrics and Gynecology, Division of Female Pelvic Medicine and Reconstructive Surgery, Duke University, Durham, North Carolina, USA.
Amanda HollandDepartment of Obstetrics and Gynecology, Oregon Health & Science University, Portland, Oregon, USA.
Thomas HalversonDepartment of Microbiology and Immunology, Stritch School of Medicine, Loyola University Chicagogrid.164971.c, Maywood, Illinois, USA.
Roberto LimeriaLoyola Genomics Facility, Stritch School of Medicine, Loyola University Chicagogrid.164971.c, Maywood, Illinois, USA.
David PrideDepartment of Pathology, University of California, San Diego, San Diego, California, USA.
Lenore AckermanDepartment of Urology, Division of Female Pelvic Medicine and Reconstructive Surgery, University of California, Los Angeles, Los Angeles, California, USA.
Catherine S ForsterDepartment of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.
Kristin M JacobsDepartment of Obstetrics and Gynecology, Division of Female Pelvic Medicine and Reconstructive Surgery, Rush University, Chicago, Illinois, USA.
Krystal J Thomas-WhiteDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, California, USA.
Catherine PutontiDepartment of Microbiology and Immunology, Stritch School of Medicine, Loyola University Chicagogrid.164971.c, Maywood, Illinois, USA.
Qunfeng DongDepartment of Medicine, Stritch School of Medicine, Loyola University Chicagogrid.164971.c, Maywood, Illinois, USA.
Michael WeinsteinMolecular, Cell, and Developmental Biology, University of California, Los Angeles, Los Angeles, California, USA.
Emily S LukaczDepartment of Obstetrics, Gynecology and Reproductive Sciences, Division of Female Pelvic Medicine and Reconstructive Surgery, University of California, San Diego, San Diego, California, USA.
Lisa KarstensDepartment of Clinical Epidemiology and Medical Informatics, Oregon Health & Science University, Portland, Oregon, USA.
Alan J WolfeDepartment of Microbiology and Immunology, Stritch School of Medicine, Loyola University Chicagogrid.164971.c, Maywood, Illinois, USA.

Funding

Functional Considerations of the Urinary Microbiome in Overactive BladderK01DK116706 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI KARSTENS, LISA ANNE · 2018 to 2021
$545k
The University of California San Diego (UCSD) 2020 Urobiome ConferenceR13DK120286 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BRUBAKER, LINDA · 2018 to 2020
$20k
NIDDK NIH HHS K01 DK116706NIDDK NIH HHS R13 DK120286
6 · The paper itself

Abstract

Urobiome research has the potential to advance the understanding of a wide range of diseases, including lower urinary tract symptoms and kidney disease. Many scientific areas have benefited from early research method consensus to facilitate the greater, common good. This consensus document, developed by a group of expert investigators currently engaged in urobiome research (UROBIOME 2020 conference participants), aims to promote standardization and advances in this field by the adoption of common core research practices. We propose a standardized nomenclature as well as considerations for specimen collection, preservation, storage, and processing. Best practices for urobiome study design include our proposal for standard metadata elements as part of core metadata collection. Although it is impractical to follow fixed analytical procedures when analyzing urobiome data, we propose guidelines to document and report data originating from urobiome studies. We offer this first consensus document with every expectation of subsequent revision as our field progresses.

Indexed as

consensusguidelinehuman microbiomeresearchstatementurinary microbiomeurobiome

Identifiers

PMID34282932
PMCPMC8409733

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.