Evidence map›Paper›PMID 34282282›Full record

ArticleThe ISME journal2022

Transcriptional response to host chemical cues underpins the expansion of host range in a fungal plant pathogen lineage.

Stefan Kusch, Justine Larrouy, Heba M M Ibrahim, Shantala Mounichetty, Noémie Gasset, Olivier Navaud, Malick Mbengue, Catherine Zanchetta, Céline Lopez-Roques, Cécile Donnadieu and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Combined generalist and host-specific transcriptional strategies enable host generalism in the fungal pathogenProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Genome-Wide Identification of CFEM Proteins inPlants (Basel, Switzerland) · 2026
    Article
  4. A Near-T2T Genome Assembly ofJournal of fungi (Basel, Switzerland) · 2026
    Article
  5. The Guanine Exchange FactorJournal of fungi (Basel, Switzerland) · 2025
    Article
  6. Article
  7. Article
  8. Review
  9. Genomic and transcriptomic analyses ofFrontiers in microbiology · 2024
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Frontiers in plant science · 2023
    Article
  15. Article
  16. Review
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 5 countries.

Stefan KuschLaboratoire des Interactions Plantes Microorganismes Environnement (LIPME), INRAE, CNRS, Castanet Tolosan Cedex, France.ORCID http://orcid.org/0000-0002-2472-5255
Justine Larrouy *Laboratoire des Interactions Plantes Microorganismes Environnement (LIPME), INRAE, CNRS, Castanet Tolosan Cedex, France.
Heba M M Ibrahim *Laboratoire des Interactions Plantes Microorganismes Environnement (LIPME), INRAE, CNRS, Castanet Tolosan Cedex, France.ORCID http://orcid.org/0000-0003-0603-7755
Shantala MounichettyLaboratoire des Interactions Plantes Microorganismes Environnement (LIPME), INRAE, CNRS, Castanet Tolosan Cedex, France.
Noémie GassetLaboratoire des Interactions Plantes Microorganismes Environnement (LIPME), INRAE, CNRS, Castanet Tolosan Cedex, France.
Olivier NavaudLaboratoire des Interactions Plantes Microorganismes Environnement (LIPME), INRAE, CNRS, Castanet Tolosan Cedex, France.
Malick MbengueLaboratoire des Interactions Plantes Microorganismes Environnement (LIPME), INRAE, CNRS, Castanet Tolosan Cedex, France.
Catherine ZanchettaINRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.
Céline Lopez-RoquesINRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.
Cécile DonnadieuINRAE, US 1426, GeT-PlaGe, Genotoul, Castanet-Tolosan, France.
Laurence GodiardLaboratoire des Interactions Plantes Microorganismes Environnement (LIPME), INRAE, CNRS, Castanet Tolosan Cedex, France.ORCID http://orcid.org/0000-0001-5332-092X
Sylvain RaffaeleLaboratoire des Interactions Plantes Microorganismes Environnement (LIPME), INRAE, CNRS, Castanet Tolosan Cedex, France. sylvain.raffaele@inrae.fr.ORCID http://orcid.org/0000-0002-2442-9632
Laboratoire des Interactions Plantes Micro-Organismes · FRGénétique Physiologie et Systèmes d'Elevage · FRCairo University · EGLincoln University · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The host range of parasites is an important factor in assessing the dynamics of disease epidemics. The evolution of pathogens to accommodate new hosts may lead to host range expansion, a process the molecular bases of which are largely enigmatic. The fungus Sclerotinia sclerotiorum has been reported to parasitize more than 400 plant species from diverse eudicot families while its close relative, S. trifoliorum, is restricted to plants from the Fabaceae family. We analyzed S. sclerotiorum global transcriptome reprogramming on hosts from six botanical families and reveal a flexible, host-specific transcriptional program. We generated a chromosome-level genome assembly for S. trifoliorum and found near-complete gene space conservation in two representative strains of broad and narrow host range Sclerotinia species. However, S. trifoliorum showed increased sensitivity to the Brassicaceae defense compound camalexin. Comparative analyses revealed a lack of transcriptional response to camalexin in the S. trifoliorum strain and suggest that regulatory variation in detoxification and effector genes at the population level may associate with the genetic accommodation of Brassicaceae in the Sclerotinia host range. Our work proposes transcriptional plasticity and the co-existence of signatures for generalist and polyspecialist adaptive strategies in the genome of a plant pathogen.

Indexed as

CuesHost SpecificityHumansPlant DiseasesPlantsTranscriptome

Identifiers

PMID34282282
PMCPMC8692328
OpenAlexW3183895441

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.