Evidence map›Paper›PMID 34282196›Full record

ArticleScientific reports2021

Metagenomic identification of a new sarbecovirus from horseshoe bats in Europe.

Jack M Crook, Ivana Murphy, Daniel P Carter, Steven T Pullan, Miles Carroll, Richard Vipond, Andrew A Cunningham, Diana Bell

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 51 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Jack M Crook *National Infection Service, Public Health England, Porton Down, Salisbury, UK.
Ivana Murphy *Centre for Ecology, Evolution and Conservation, School of Biological Sciences, University of East Anglia, Norwich, NR4 7TJ, UK.
Daniel P CarterNational Infection Service, Public Health England, Porton Down, Salisbury, UK.
Steven T PullanNational Infection Service, Public Health England, Porton Down, Salisbury, UK.
Miles CarrollNational Infection Service, Public Health England, Porton Down, Salisbury, UK.
Richard VipondNational Infection Service, Public Health England, Porton Down, Salisbury, UK.
Andrew A Cunningham *Institute of Zoology, Zoological Society of London, London, NW1 4RY, UK. a.cunningham@ioz.ac.uk.
Diana Bell *Centre for Ecology, Evolution and Conservation, School of Biological Sciences, University of East Anglia, Norwich, NR4 7TJ, UK.
Public Health England · GBUniversity of East Anglia · GBCentre for Human Genetics · GBUniversity of Liverpool · GBZoological Society of London · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The source of the COVID-19 pandemic is unknown, but the natural host of the progenitor sarbecovirus is thought to be Asian horseshoe (rhinolophid) bats. We identified and sequenced a novel sarbecovirus (RhGB01) from a British horseshoe bat, at the western extreme of the rhinolophid range. Our results extend both the geographic and species ranges of sarbecoviruses and suggest their presence throughout the horseshoe bat distribution. Within the spike protein receptor binding domain, but excluding the receptor binding motif, RhGB01 has a 77% (SARS-CoV-2) and 81% (SARS-CoV) amino acid homology. While apparently lacking hACE2 binding ability, and hence unlikely to be zoonotic without mutation, RhGB01 presents opportunity for SARS-CoV-2 and other sarbecovirus homologous recombination. Our findings highlight that the natural distribution of sarbecoviruses and opportunities for recombination through intermediate host co-infection are underestimated. Preventing transmission of SARS-CoV-2 to bats is critical with the current global mass vaccination campaign against this virus.

Indexed as

Amino Acid SequenceAnimalsBetacoronavirusChiropteraEuropeGenome, ViralMetagenomicsPhylogenySARS-CoV-2Severe acute respiratory syndrome-related coronavirusSpike Glycoprotein, CoronavirusSpike Glycoprotein, Coronavirus

Identifiers

PMID34282196
PMCPMC8289822
OpenAlexW3145803061

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.