Evidence map›Paper›PMID 34281993›Full record

ArticleJournal of medical genetics2022

Novel germline variant in the histone demethylase and transcription regulator KDM4C induces a multi-cancer phenotype.

Riku Katainen, Iikki Donner, Maritta Räisänen, Davide Berta, Anna Kuosmanen, Eevi Kaasinen, Marja Hietala, Lauri A Aaltonen

Open access · hybridAbstract read
In one paragraph

Article in Journal of medical genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. KDM4 Demethylases: Structure, Function, and Inhibitors.Advances in experimental medicine and biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Riku Katainen *Applied Tumor Genomics Research Program and Department of Medical and Clinical Genetics, University of Helsinki Faculty of Medicine, Helsinki, Finland.ORCID 0000-0003-4575-4239
Iikki Donner *Applied Tumor Genomics Research Program and Department of Medical and Clinical Genetics, University of Helsinki Faculty of Medicine, Helsinki, Finland.
Maritta Räisänen *Applied Tumor Genomics Research Program and Department of Medical and Clinical Genetics, University of Helsinki Faculty of Medicine, Helsinki, Finland.
Davide BertaApplied Tumor Genomics Research Program and Department of Medical and Clinical Genetics, University of Helsinki Faculty of Medicine, Helsinki, Finland.
Anna KuosmanenApplied Tumor Genomics Research Program and Department of Medical and Clinical Genetics, University of Helsinki Faculty of Medicine, Helsinki, Finland.
Eevi KaasinenApplied Tumor Genomics Research Program and Department of Medical and Clinical Genetics, University of Helsinki Faculty of Medicine, Helsinki, Finland.
Marja HietalaDepartment of Clinical Genetics, TYKS Turku University Hospital and University of Turku Institute of Biomedicine, Turku, Finland.
Lauri A AaltonenApplied Tumor Genomics Research Program and Department of Medical and Clinical Genetics, University of Helsinki Faculty of Medicine, Helsinki, Finland lauri.aaltonen@helsinki.fi.
University of Helsinki · FIUniversity of Turku · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGenes involved in epigenetic regulation are central for chromatin structure and gene expression. Specific mutations in these might promote carcinogenesis in several tissue types.

methodsWe used exome, whole-genome and Sanger sequencing to detect rare variants shared by seven affected individuals in a striking early-onset multi-cancer family. The only variant that segregated with malignancy resided in a histone demethylase KDM4C. Consequently, we went on to study the epigenetic landscape of the mutation carriers with ATAC, ChIP (chromatin immunoprecipitation) and RNA-sequencing from lymphoblastoid cell lines to identify possible pathogenic effects.

resultsA novel variant in

conclusionsThe apparent dysregulation of H3K9 trimethylation and KDM4C-associated genes in lymphoblastoid cells supports the hypothesis that the

Indexed as

Histone DemethylasesJumonji Domain-Containing Histone DemethylasesNeoplasmsChromatinEpigenesis, GeneticGerm CellsHistonesHumansPhenotypeChromatinHistone DemethylasesHistonesJumonji Domain-Containing Histone DemethylasesKDM4C protein, humanepigenomicsgene expressiongenetic predisposition to diseasegenetic researchhuman genetics

Identifiers

PMID34281993
PMCPMC9252859
OpenAlexW3186774969

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.