Evidence map›Paper›PMID 34280369›Full record

ArticleBiophysical journal2021

TTAPE-Me dye is not selective to cardiolipin and binds to common anionic phospholipids nonspecifically.

Kyrylo Pyrshev, Semen Yesylevskyy, Mikhail Bogdanov

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Dark Side ofJournal of the American Chemical Society · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. CLiB - a novel cardiolipin-binder isolatedRSC chemical biology · 2022
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 4 countries.

Kyrylo PyrshevLaboratory of the Nanobiotechnologies, Department of Neurochemistry, Palladin Institute of Biochemistry of the NAS of Ukraine, Kyiv, Ukraine; Department of Physics of Biological Systems, Institute of Physics, NAS of Ukraine, Kyiv, Ukraine; Department of Integrative Biology and Pharmacology, McGovern Medical School at The University of Texas Health Science Center at Houston, Houston, Texas. Electronic address: kyrylo.a.pyrshev@uth.tmc.edu.
Semen YesylevskyyDepartment of Physics of Biological Systems, Institute of Physics, NAS of Ukraine, Kyiv, Ukraine; Laboratoire Chrono Environnement UMR CNRS 6249, Université de Bourgogne Franche-Comté, Besançon Cedex, France.
Mikhail BogdanovDepartment of Biochemistry and Molecular Biology, McGovern Medical School at The University of Texas Health Science Center at Houston, Houston, Texas; Department of Biochemistry, Biotechnology and Pharmacology, Kazan Federal University, Institute of Fundamental Medicine and Biology, Kazan, Russian Federation. Electronic address: mikhail.v.bogdanov@uth.tmc.edu.
Centre National de la Recherche Scientifique · FRKazan Federal University · RUPalladin Institute of Biochemistry · UA

Funding

Protein sequence determinants and properties of the lipid bilayer that govern membrane protein dynamic organizationR01GM121493 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI BOGDANOV, MIKHAIL V., DOWHAN, WILLIAM · 2017 to 2025
$3.6M
The Role of Cardiolipin in Assembly and Function of the Mitochondrial RespirasomeR01GM115969 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI DOWHAN, WILLIAM · 2017 to 2020
$1.8M
NIGMS NIH HHS R01 GM115969NIGMS NIH HHS R01 GM121493
6 · The paper itself

Abstract

Identification, visualization, and quantitation of cardiolipin (CL) in biological membranes is of great interest because of the important structural and physiological roles of this lipid. Selective fluorescent detection of CL using noncovalently bound fluorophore 1,1,2,2-tetrakis[4-(2-trimethylammonioethoxy)-phenylethene (TTAPE-Me) has been recently proposed. However, this dye was only tested on wild-type mitochondria or liposomes containing negligible amounts of other anionic lipids, such as phosphatidylglycerol (PG) and phosphatidylserine (PS). No clear preference of TTAPE-Me for binding to CL compared to PG and PS was found in our experiments on artificial liposomes, Escherichia coli inside-out vesicles, or Saccharomyces cerevisiae mitochondria in vitro or in situ, respectively. The shapes of the emission spectra for these anionic phospholipids were also found to be indistinguishable. Thus, TTAPE-Me is not suitable for detection, visualization, and localization of CL in the presence of other anionic lipids present in substantial physiological amounts. Our experiments and complementary molecular dynamics simulations suggest that fluorescence intensity of TTAPE-Me is regulated by dynamic equilibrium between emitting dye aggregates, stabilized by unspecific but thermodynamically favorable electrostatic interactions with anionic lipids, and nonemitting dye monomers. These results should be taken into consideration when interpreting past and future results of CL detection and localization studies with this probe in vitro and in vivo. Provided methodology emphasizes minimal experimental requirements, which should be considered as a guideline during the development of novel lipid-specific probes.

Indexed as

CardiolipinsPhospholipidsAnionsLiposomesPhosphatidylglycerolsAnionsCardiolipinsLiposomesPhosphatidylglycerolsPhospholipids

Identifiers

PMID34280369
PMCPMC8456184
OpenAlexW3184198506

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.