Evidence map›Paper›PMID 34278334›Full record

ArticleSTAR protocols2021

A protocol for qualitative and quantitative measurement of endosomal processing using hot spot analysis.

Cristina C Clement, Padma P Nanaware, Lawrence J Stern, Laura Santambrogio

Abstract read
In one paragraph

Article in STAR protocols, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Cristina C ClementDepartment of Radiation Oncology, Weill Cornell Medicine, New York, NY 10065 USA.
Padma P NanawareDepartment of Pathology, University of Massachusetts Medical School, Worcester, MA 01655, USA.
Lawrence J SternDepartment of Pathology, University of Massachusetts Medical School, Worcester, MA 01655, USA.
Laura SantambrogioDepartment of Radiation Oncology, Weill Cornell Medicine, New York, NY 10065 USA.

Funding

Role of Autophagy in T Cell Function and Immunosenescence (Project 3)P01AG031782 · NIA · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI CUERVO, ANA MARIA · 2009 to 2024
$36.2M
DYNAMICS AND TUNING OF THE MHC II PRESENTED PEPTIDOMER01AI137198 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI SANTAMBROGIO, LAURA, STERN, LAWRENCE J. · 2018 to 2022
$4.6M
Effects of Glycation and Carbonylation on MHC II-restricted immunityR01AI146180 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI SANTAMBROGIO, LAURA, STERN, LAWRENCE J. · 2020 to 2024
$3.7M
NIAID NIH HHS R01 AI137198NIAID NIH HHS R01 AI146180NIA NIH HHS P01 AG031782
6 · The paper itself

Abstract

A detailed quantification of antigen processing by endosomal compartments provides important information on the pattern of protein fragmentation. Here, we describe a protocol that combines gradient purified endosomes, incubated with antigens, followed by hot spot analysis of MS/MS-sequenced peptides. The analysis identifies differences in endosomal antigen processing by dendritic cells under diverse experimental conditions. For complete details on the use and execution of this protocol, please refer to Clement et al. (2021).

Indexed as

AnimalsAntigensDendritic CellsEndosomesMembrane ProteinsMiceMolecular BiologyPeptidesTandem Mass SpectrometryAntigensflt3 ligand proteinMembrane ProteinsPeptidesantigen processing and presentationendosomesMHC II

Identifiers

PMID34278334
PMCPMC8264744

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.