Evidence map›Paper›PMID 34277822›Full record

ArticleAnnals of translational medicine2021

Establishment of a prognostic-related microRNAs risk model for glioma by bioinformatics analysis.

Yunkun Wang, Chenran Zhang, Weiwei Lu, Ruoping Chen, Mingkun Yu

Open access · diamondAbstract read
In one paragraph

Article in Annals of translational medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

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  6. Genetic Variations ofPharmacogenomics and personalized medicine · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Yunkun WangDepartment of Pediatric Neurosurgery, Xinhua Hospital Affiliated to Medical College of Shanghai Jiaotong University, Shanghai, China.
Chenran ZhangDepartment of Pediatric Neurosurgery, Xinhua Hospital Affiliated to Medical College of Shanghai Jiaotong University, Shanghai, China.
Weiwei LuDepartment of General Medicine, Xinhua Hospital Affiliated to Medical College of Shanghai Jiaotong University, Shanghai, China.
Ruoping ChenDepartment of Pediatric Neurosurgery, Xinhua Hospital Affiliated to Medical College of Shanghai Jiaotong University, Shanghai, China.
Mingkun YuDepartment of Neurosurgery, Shanghai Changzheng Hospital Affiliated to Shanghai Second Military Medical University, Shanghai, China.
XinHua Hospital · CNShanghai Changzheng Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTo explore the specific prognosis related microRNAs (miRNAs) of glioma.

methodsThe miRNA-Seq data and clinical information of glioma patients were downloaded from the TCGA (510 cases) and GEO (GSE112009, 25 cases) database. LASSO & COX regression was used to develop a miRNA-based model for predicting patient survival in the training set (n=255), to carry out glioma prognostic related miRNAs screening, and to construct a linear risk model based on the expression profiles of seven miRNAs. COX regression analysis was used to determine whether the miRNAs risk model was an independent prognostic factor.

resultsSeven survival-related miRNAs (miR-140-5p, miR-145-5p, miR-148a-3p, miR-183-5p, miR-222-3p, miR-223-3p, and miR-374a-5p) were identified in the training set. This showed that the overall survival time of the high-risk group was significantly lower than that of the low-risk group in the training set, prediction set, and validation set (P<0.05). Further analysis revealed that age and Karnofsky score both affected the risk of glioma. By crossing seven potential target genes of microRNAs, 620 effective target genes were obtained and GO analysis showed that these were related to the positive regulation of cell migration, neuron migration, and the response of transforming growth factor, and KEGG analysis showed they were related to the TGF-beta signaling pathway, MAPK signaling, and AGE-RAGE signaling pathway in diabetic complications.

conclusionsSeven miRNAs which regulate target genes to participate in related signaling pathways and lead to a poor prognosis were identified as biomarkers of glioma.

Indexed as

bioinformaticsgenomicsGliomamicro-RNA (miRNA)The Cancer Genome Atlas (TCGA)

Identifiers

PMID34277822
PMCPMC8267265
OpenAlexW3174951358

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.