Evidence map›Paper›PMID 34277599›Full record

ArticleFrontiers in cell and developmental biology2021

Characterization of DNA Methylomic Signatures in Induced Pluripotent Stem Cells During Neuronal Differentiation.

Jennifer Imm, Ehsan Pishva, Muhammadd Ali, Talitha L Kerrigan, Aaron Jeffries, Joe Burrage, Enrico Glaab, Emma L Cope, Kimberley M Jones, Nicholas D Allen and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cell and developmental biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Jennifer ImmInstitute of Biomedical and Clinical Sciences, University of Exeter Medical School, University of Exeter, Exeter, United Kingdom.
Ehsan PishvaInstitute of Biomedical and Clinical Sciences, University of Exeter Medical School, University of Exeter, Exeter, United Kingdom.
Muhammadd AliBiomedical Data Science Group, Luxembourg Centre for System Biomedicine, University of Luxembourg, Belvaux, Luxembourg.
Talitha L KerriganInstitute of Biomedical and Clinical Sciences, University of Exeter Medical School, University of Exeter, Exeter, United Kingdom.
Aaron JeffriesInstitute of Biomedical and Clinical Sciences, University of Exeter Medical School, University of Exeter, Exeter, United Kingdom.
Joe BurrageInstitute of Biomedical and Clinical Sciences, University of Exeter Medical School, University of Exeter, Exeter, United Kingdom.
Enrico GlaabBiomedical Data Science Group, Luxembourg Centre for System Biomedicine, University of Luxembourg, Belvaux, Luxembourg.
Emma L CopeSchool of Biosciences, Cardiff University, Cardiff, United Kingdom.
Kimberley M JonesSchool of Biosciences, Cardiff University, Cardiff, United Kingdom.
Nicholas D AllenSchool of Biosciences, Cardiff University, Cardiff, United Kingdom.
Katie LunnonInstitute of Biomedical and Clinical Sciences, University of Exeter Medical School, University of Exeter, Exeter, United Kingdom.
University of Exeter · GBCardiff University · GBUniversity of Luxembourg · LU

Funding

Medical Research Council MR/L023784/2Medical Research Council MR/N027973/1
6 · The paper itself

Abstract

In development, differentiation from a pluripotent state results in global epigenetic changes, although the extent to which this occurs in induced pluripotent stem cell-based neuronal models has not been extensively characterized. In the present study, induced pluripotent stem cell colonies (33Qn1 line) were differentiated and collected at four time-points, with DNA methylation assessed using the Illumina Infinium Human Methylation EPIC BeadChip array. Dynamic changes in DNA methylation occurring during differentiation were investigated using a data-driven trajectory inference method. We identified a large number of Bonferroni-significant loci that showed progressive alterations in DNA methylation during neuronal differentiation. A gene-gene interaction network analysis identified 60 densely connected genes that were influential in the differentiation of neurons, with

Indexed as

agingDNA methylationEPIC arrayepigeneticsepigenome-wide association studyinduced pluripotent stem cellsneuronal differentiationtrajectory inference

Identifiers

PMID34277599
PMCPMC8281298
OpenAlexW3166827871

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.