Evidence map›Paper›PMID 34272467›Full record

ArticleNPJ precision oncology2021

Comprehensive functional evaluation of variants of fibroblast growth factor receptor genes in cancer.

Ikuko Takeda Nakamura, Shinji Kohsaka, Masachika Ikegami, Hiroshi Ikeuchi, Toshihide Ueno, Kunhua Li, Tyler S Beyett, Takafumi Koyama, Toshio Shimizu, Noboru Yamamoto and 4 more

Open access · goldAbstract read
In one paragraph

Article in NPJ precision oncology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 1 synthesis or guideline pooled it, 52 citations in OpenAlex.

  1. Frontiers in oncology · 2021
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  20. New perspectives in biliary tract cancers.ESMO gastrointestinal oncology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Ikuko Takeda NakamuraDivision of Cellular Signaling, National Cancer Center Research Institute, Tokyo, Japan.
Shinji KohsakaDivision of Cellular Signaling, National Cancer Center Research Institute, Tokyo, Japan. skohsaka@ncc.go.jp.ORCID http://orcid.org/0000-0001-8651-6136
Masachika IkegamiDivision of Cellular Signaling, National Cancer Center Research Institute, Tokyo, Japan.
Hiroshi IkeuchiDivision of Cellular Signaling, National Cancer Center Research Institute, Tokyo, Japan.
Toshihide UenoDivision of Cellular Signaling, National Cancer Center Research Institute, Tokyo, Japan.
Kunhua LiDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.
Tyler S BeyettDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0001-5509-7004
Takafumi KoyamaDepartment of Experimental Therapeutics, National Cancer Center Hospital, Tokyo, Japan.
Toshio ShimizuDepartment of Experimental Therapeutics, National Cancer Center Hospital, Tokyo, Japan.
Noboru YamamotoDepartment of Experimental Therapeutics, National Cancer Center Hospital, Tokyo, Japan.
Fumiyuki TakahashiDepartment of Respiratory Medicine, Graduate School of Medicine, Juntendo University, Tokyo, Japan.
Kazuhisa TakahashiDepartment of Respiratory Medicine, Graduate School of Medicine, Juntendo University, Tokyo, Japan.
Michael J EckDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.
Hiroyuki ManoDivision of Cellular Signaling, National Cancer Center Research Institute, Tokyo, Japan. hmano@ncc.go.jp.ORCID http://orcid.org/0000-0003-4645-0181
Harvard University · USJuntendo University · JPTokyo National Hospital · JPNational Cancer Research Institute · GBTokyo Metropolitan Komagome Hospital · JP

Funding

Inhibitor-sensitive and -resistant EGFR mutants from lung cancer and glioblastomaR01CA116020 · NCI · DANA-FARBER CANCER INST · PI ECK, MICHAEL J, MEYERSON, MATTHEW L. · 2006 to 2022
$5.1M
Japan Agency for Medical Research and Development (AMED) JP18kk0205003Japan Agency for Medical Research and Development (AMED) JP19ck0106252Japan Agency for Medical Research and Development (AMED) JP19cm0106502NCI NIH HHS R01 CA116020
6 · The paper itself

Abstract

Various genetic alterations of the fibroblast growth factor receptor (FGFR) family have been detected across a wide range of cancers. However, inhibition of FGFR signaling by kinase inhibitors demonstrated limited clinical effectiveness. Herein, we evaluated the transforming activity and sensitivity of 160 nonsynonymous FGFR mutations and ten fusion genes to seven FGFR tyrosine kinase inhibitors (TKI) using the mixed-all-nominated-in-one (MANO) method, a high-throughput functional assay. The oncogenicity of 71 mutants was newly discovered in this study. The FGFR TKIs showed anti-proliferative activities against the wild-type FGFRs and their fusions, while several hotspot mutants were relatively resistant to those TKIs. The drug sensitivities assessed with the MANO method were well concordant with those evaluated using in vitro and in vivo assays. Comprehensive analysis of published FGFR structures revealed a possible mechanism through which oncogenic FGFR mutations reduce sensitivity to TKIs. It was further revealed that recurrent compound mutations within FGFRs affect the transforming potential and TKI-sensitivity of corresponding kinases. In conclusion, our study suggests the importance of selecting suitable inhibitors against individual FGFR variants. Moreover, it reveals the necessity to develop next-generation FGFR inhibitors, which are effective against all oncogenic FGFR variants.

Identifiers

PMID34272467
PMCPMC8285406
OpenAlexW3182025581

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.