Evidence map›Paper›PMID 34272386›Full record

ArticleNature communications2021

Selective targeting of ligand-dependent and -independent signaling by GPCR conformation-specific anti-US28 intrabodies.

Timo W M De Groof, Nick D Bergkamp, Raimond Heukers, Truc Giap, Maarten P Bebelman, Richard Goeij-de Haas, Sander R Piersma, Connie R Jimenez, K Christopher Garcia, Hidde L Ploegh and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. NanoBCell reports methods · 2023
    Article
  14. Review
  15. Review
  16. Review
  17. Review
  18. ATRAP, a receptor-interacting modulator of kidney physiology, as a novel player in blood pressure and beyond.Hypertension research : official journal of the Japanese Society of Hypertension · 2022
    Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Timo W M De Groof *Amsterdam Institute of Molecular and Life Sciences (AIMMS), Division of Medicinal Chemistry, Faculty of Sciences, VU University, Amsterdam, The Netherlands.ORCID 0000-0001-6918-2955
Nick D Bergkamp *Amsterdam Institute of Molecular and Life Sciences (AIMMS), Division of Medicinal Chemistry, Faculty of Sciences, VU University, Amsterdam, The Netherlands.
Raimond HeukersAmsterdam Institute of Molecular and Life Sciences (AIMMS), Division of Medicinal Chemistry, Faculty of Sciences, VU University, Amsterdam, The Netherlands.ORCID 0000-0003-4498-7751
Truc GiapAmsterdam Institute of Molecular and Life Sciences (AIMMS), Division of Medicinal Chemistry, Faculty of Sciences, VU University, Amsterdam, The Netherlands.
Maarten P BebelmanAmsterdam Institute of Molecular and Life Sciences (AIMMS), Division of Medicinal Chemistry, Faculty of Sciences, VU University, Amsterdam, The Netherlands.
Richard Goeij-de HaasDepartment of Medical Oncology, Amsterdam University Medical Center, VU University, Cancer Center Amsterdam, Amsterdam, The Netherlands.
Sander R PiersmaDepartment of Medical Oncology, Amsterdam University Medical Center, VU University, Cancer Center Amsterdam, Amsterdam, The Netherlands.
Connie R JimenezDepartment of Medical Oncology, Amsterdam University Medical Center, VU University, Cancer Center Amsterdam, Amsterdam, The Netherlands.
K Christopher GarciaDepartment of Molecular and Cellular Physiology, Stanford University School of Medicine, Stanford, USA.ORCID 0000-0001-9273-0278
Hidde L PloeghProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, USA.ORCID 0000-0002-1090-6071
Marco SideriusAmsterdam Institute of Molecular and Life Sciences (AIMMS), Division of Medicinal Chemistry, Faculty of Sciences, VU University, Amsterdam, The Netherlands.ORCID 0000-0003-3630-4228
Martine J SmitAmsterdam Institute of Molecular and Life Sciences (AIMMS), Division of Medicinal Chemistry, Faculty of Sciences, VU University, Amsterdam, The Netherlands. mj.smit@vu.nl.ORCID 0000-0003-2713-0238
Cancer Center Amsterdam · NLBoston Children's Hospital · USHoward Hughes Medical Institute · USQserve Group (Netherlands) · NLVrije Universiteit Amsterdam · NLVrije Universiteit Brussel · BE

Funding

Viral GPCR recognition of chemokines and engineered ligandsR01AI125320 · NIAID · STANFORD UNIVERSITY · PI GARCIA, KENAN CHRISTOPHER · 2016 to 2020
$2.0M
NIAID NIH HHS R01 AI125320
6 · The paper itself

Abstract

While various GPCRs, including US28, display constitutive, ligand-independent activity, it remains to be established whether ligand-dependent and -independent active conformations differ and can be selectively modulated. Previously, the agonist-bound conformation of US28 was stabilized and its structure was solved using the anti-US28 nanobody Nb7. Here we report the recognition of the constitutively active, apo-conformation of US28 by another nanobody VUN103. While the Nb7 intrabody selectively inhibits ligand-induced signaling, the VUN103 intrabody blocks constitutive signaling, indicating the existence of distinct US28 conformational states. By displacing Gα

Indexed as

beta-ArrestinsChemokine CX3CL1Chromatography, LiquidCytomegalovirusHEK293 CellsHumansLigandsMolecular ConformationProtein BindingReceptors, ChemokineReceptors, G-Protein-CoupledSignal TransductionSingle-Domain AntibodiesSpheroids, CellularTandem Mass SpectrometryViral Proteinsbeta-ArrestinsChemokine CX3CL1LigandsReceptors, ChemokineReceptors, G-Protein-CoupledSingle-Domain AntibodiesUS28 receptor, CytomegalovirusViral Proteins

Identifiers

PMID34272386
PMCPMC8285524
OpenAlexW3182096034

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.