Evidence map›Paper›PMID 34272287›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Divergence among rice cultivars reveals roles for transposition and epimutation in ongoing evolution of genomic imprinting.

Jessica A Rodrigues, Ping-Hung Hsieh, Deling Ruan, Toshiro Nishimura, Manoj K Sharma, Rita Sharma, XinYi Ye, Nicholas D Nguyen, Sukhranjan Nijjar, Pamela C Ronald and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

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  10. Transgenerational Paternal Inheritance ofInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Jessica A RodriguesDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.ORCID 0000-0002-1562-2211
Ping-Hung HsiehDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.ORCID 0000-0003-3528-8617
Deling RuanDepartment of Plant Pathology, University of California, Davis, CA 95616.ORCID 0000-0003-0595-2206
Toshiro NishimuraDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.
Manoj K SharmaDepartment of Plant Pathology, University of California, Davis, CA 95616.
Rita SharmaDepartment of Plant Pathology, University of California, Davis, CA 95616.
XinYi YeDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.
Nicholas D NguyenDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.ORCID 0000-0002-3481-0672
Sukhranjan NijjarDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.
Pamela C RonaldDepartment of Plant Pathology, University of California, Davis, CA 95616.ORCID 0000-0002-4107-1345
Robert L FischerDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720; rfischer@berkeley.edu daniel.zilberman@jic.ac.uk.
Daniel ZilbermanDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720; rfischer@berkeley.edu daniel.zilberman@jic.ac.uk.
University of California, Berkeley · USUniversity of California, Davis · USJohn Innes Centre · GB

Funding

Regulation and Function of DNA Demethylation in ArabidopsisR01GM069415 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI FISCHER, ROBERT L, ZILBERMAN, DANIEL · 2004 to 2016
$3.8M
Activation of immune receptor signaling by a sulfated peptideR01GM122968 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI RONALD, PAMELA C · 2017 to 2020
$2.1M
Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
NIGMS NIH HHS R01 GM069415NIGMS NIH HHS R01 GM122968NIH HHS S10 OD018174
6 · The paper itself

Abstract

Parent-of-origin-dependent gene expression in mammals and flowering plants results from differing chromatin imprints (genomic imprinting) between maternally and paternally inherited alleles. Imprinted gene expression in the endosperm of seeds is associated with localized hypomethylation of maternally but not paternally inherited DNA, with certain small RNAs also displaying parent-of-origin-specific expression. To understand the evolution of imprinting mechanisms in

Indexed as

Evolution, MolecularGenomic ImprintingDNA MethylationDNA Transposable ElementsEndospermEpigenomicsGene Expression Regulation, PlantMutationOryzaPlant ProteinsDNA Transposable ElementsPlant Proteinsbisulfite sequencingchromatin modificationepigenomesiren locitranscriptome

Identifiers

PMID34272287
PMCPMC8307775
OpenAlexW3180005229

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.