Evidence map›Paper›PMID 34271681›Full record

ArticlePhysical review. E2021

Effective diffusivity of a Brownian particle in a two-dimensional periodic channel of abruptly alternating width.

Leonardo Dagdug, Alexander M Berezhkovskii, Vladimir Yu Zitserman, Sergey M Bezrukov

Abstract read
In one paragraph

Article in Physical review. E, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Leonardo DagdugDepartamento de Fisica, Universidad Autonoma Metropolitana-Iztapalapa, 09340 Mexico City, Mexico.
Alexander M BerezhkovskiiMathematical and Statistical Computing Laboratory, Office of Intramural Research, Center for Information Technology, National Institutes of Health, Bethesda, Maryland 20819, USA.
Vladimir Yu ZitsermanJoint Institute for High temperatures, Russian Academy of Sciences, Izhorskaya 13, Bldg. 2, Moscow 125412, Russia.
Sergey M BezrukovSection of Molecular Transport, Eunice Kennedy Shriver National Institute of Child health and Human Development, National Institutes of Health, Bethesda, Maryland 20819, USA.

Funding

Biophysics of Large Membrane ChannelsZIAHD000072 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI BEZRUKOV, SERGEY M · 2009 to 2025
$22.8M
Modeling of kinetic processes in biological systemsZIACT000273 · CIT · CENTER FOR INFORMATION TECHNOLOGY · PI BEREZHKOVSKII, ALEXANDER · 2009 to 2021
$2.1M
Intramural NIH HHS ZIA HD000072
6 · The paper itself

Abstract

We study diffusion of a Brownian particle in a two-dimensional periodic channel of abruptly alternating width. Our main result is a simple approximate analytical expression for the particle effective diffusivity, which shows how the diffusivity depends on the geometric parameters of the channel: lengths and widths of its wide and narrow segments. The result is obtained in two steps: first, we introduce an approximate one-dimensional description of particle diffusion in the channel, and second, we use this description to derive the expression for the effective diffusivity. While the reduction to the effective one-dimensional description is standard for systems of smoothly varying geometry, such a reduction in the case of abruptly changing geometry requires a new methodology used here, which is based on the boundary homogenization approach to the trapping problem. To test the accuracy of our analytical expression and thus establish the range of its applicability, we compare analytical predictions with the results obtained from Brownian dynamics simulations. The comparison shows excellent agreement between the two, on condition that the length of the wide segment of the channel is equal to or larger than its width.

Identifiers

PMID34271681
PMCPMC9006170

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.