Evidence map›Paper›PMID 34271009›Full record

ArticleJournal of molecular biology2021

Arginine Modulates Carbapenem Deactivation by OXA-24/40 in Acinetobacter baumannii.

Jamie VanPelt, Shannon Stoffel, Michael W Staude, Kayla Dempster, Heath A Rose, Sarah Graney, Erin Graney, Sara Braynard, Elizaveta Kovrigina, David A Leonard and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Jamie VanPeltDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA.
Shannon StoffelDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA.
Michael W StaudeDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA.
Kayla DempsterDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA.
Heath A RoseDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA.
Sarah GraneyDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA.
Erin GraneyDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA.
Sara BraynardDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA.
Elizaveta KovriginaDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA.
David A LeonardDepartment of Chemistry, Grand Valley State University, Allendale, MI 49401, USA.
Jeffrey W PengDepartment of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, IN 46556, USA. Electronic address: jpeng@nd.edu.
University of Notre Dame · USGrand Valley State University · US

Funding

Defining flexibility and activity relationships for gram-negative antibiotic resistance proteinsR01GM123338 · NIGMS · UNIVERSITY OF NOTRE DAME · PI PENG, JEFFREY W · 2018 to 2021
$1.1M
NIGMS NIH HHS R01 GM123338
6 · The paper itself

Abstract

The resistance of Gram-negative bacteria to β-lactam antibiotics stems mainly from β-lactamase proteins that hydrolytically deactivate the β-lactams. Of particular concern are the β-lactamases that can deactivate a class of β-lactams known as carbapenems. Carbapenems are among the few anti-infectives that can treat multi-drug resistant bacterial infections. Revealing the mechanisms of their deactivation by β-lactamases is a necessary step for preserving their therapeutic value. Here, we present NMR investigations of OXA-24/40, a carbapenem-hydrolyzing Class D β-lactamase (CHDL) expressed in the gram-negative pathogen, Acinetobacter baumannii. Using rapid data acquisition methods, we were able to study the "real-time" deactivation of the carbapenem known as doripenem by OXA-24/40. Our results indicate that OXA-24/40 has two deactivation mechanisms: canonical hydrolytic cleavage, and a distinct mechanism that produces a β-lactone product that has weak affinity for the OXA-24/40 active site. The mechanisms issue from distinct active site environments poised either for hydrolysis or β-lactone formation. Mutagenesis reveals that R261, a conserved active site arginine, stabilizes the active site environment enabling β-lactone formation. Our results have implications not only for OXA-24/40, but the larger family of CHDLs now challenging clinical settings on a global scale.

Indexed as

Acinetobacter baumanniiAnti-Bacterial AgentsArginineBacterial Proteinsbeta-LactamasesCatalytic DomainDoripenemDrug Resistance, Multiple, BacterialHydrolysisMicrobial Sensitivity TestsModels, MolecularMolecular Dynamics SimulationProtein Structure, SecondaryAnti-Bacterial AgentsArginineBacterial Proteinsbeta-lactamase OXA-24beta-lactamase OXA-40, Acinetobacter baumanniibeta-LactamasesDoripenemallosterycarbapenemCHDLprotein dynamicsreal-time

Identifiers

PMID34271009
PMCPMC8453075
OpenAlexW3177627513

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.