Evidence map›Paper›PMID 34270859›Full record

ArticlePlant biotechnology journal2021

Inactivation of the germacrene A synthase genes by CRISPR/Cas9 eliminates the biosynthesis of sesquiterpene lactones in Cichorium intybus L.

Katarina Cankar, Paul Bundock, Robert Sevenier, Suvi T Häkkinen, Johanna Christina Hakkert, Jules Beekwilder, Ingrid M van der Meer, Michiel de Both, Dirk Bosch

Open access · goldAbstract read
In one paragraph

Article in Plant biotechnology journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 47 citations in OpenAlex.

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  7. Pharmaceuticals (Basel, Switzerland) · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Katarina CankarWageningen Plant Research, Wageningen University & Research, Wageningen, The Netherlands.ORCID 0000-0001-5149-4192
Paul BundockKeygene N.V., Wageningen, The Netherlands.
Robert SevenierKeygene N.V., Wageningen, The Netherlands.
Suvi T HäkkinenVTT Technical Research Centre of Finland, Espoo, Finland.
Johanna Christina HakkertWageningen Plant Research, Wageningen University & Research, Wageningen, The Netherlands.
Jules BeekwilderWageningen Plant Research, Wageningen University & Research, Wageningen, The Netherlands.
Ingrid M van der MeerWageningen Plant Research, Wageningen University & Research, Wageningen, The Netherlands.
Michiel de BothKeygene N.V., Wageningen, The Netherlands.
Dirk BoschWageningen Plant Research, Wageningen University & Research, Wageningen, The Netherlands.
Wageningen University & Research · NLAmerican Institute of Biological Sciences · USKeyGene (Netherlands) · NLVTT Technical Research Centre of Finland · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chicory (Cichorium intybus var. sativum) is an industrial crop species cultivated for the production of a fructose polymer inulin, which is used as a low-calorie sweetener and prebiotic. Besides, inulin chicory taproots also accumulate sesquiterpene lactones (STLs). These are bitter tasting compounds, which need to be removed during inulin extraction, resulting in additional costs. In this work, we describe chicory lines where STL accumulation is almost completely eliminated. Genome editing using the CRISPR/Cas9 system was used to inactivate four genes that encode the enzyme that performs the first dedicated step in STL synthesis, germacrene A synthase (CiGAS). Chicory lines were obtained that carried null mutations in all four CiGAS genes. Lines lacking functional CiGAS alleles showed a normal phenotype upon greenhouse cultivation and show nearly complete elimination of the STL synthesis in the roots. It was shown that the reduction in STLs could be attributed to mutations in genetically linked copies of the CiGAS-short gene and not the CiGAS-long gene, which is relevant for breeding the trait into other cultivars. The inactivation of the STL biosynthesis pathway led to increase in phenolic compounds as well as accumulation of squalene in the chicory taproot, presumably due to increased availability of farnesyl pyrophosphate (FFP). These results demonstrate that STLs are not essential for chicory growth and that the inhibition of the STL biosynthesis pathway reduced the STL levels chicory which will facilitate inulin extraction.

Indexed as

Cichorium intybusSesquiterpenesCRISPR-Cas SystemsLactonesPlant BreedingSesquiterpenes, Germacranegermacrene ALactonesSesquiterpenesSesquiterpenes, Germacranechicorygenome editinggermacrene A synthasesesquiterpene lactones

Identifiers

PMID34270859
PMCPMC8633505
OpenAlexW3179147108

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.