Evidence map›Paper›PMID 34270553›Full record

ArticlePLoS genetics2021

The selfish yeast plasmid utilizes the condensin complex and condensed chromatin for faithful partitioning.

Deepanshu Kumar, Hemant Kumar Prajapati, Anjali Mahilkar, Chien-Hui Ma, Priyanka Mittal, Makkuni Jayaram, Santanu K Ghosh

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
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  5. Spontaneous Mutations inInternational journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Deepanshu KumarDepartment of Biosciences and Bioengineering, Indian Institute of Technology, Bombay, Powai, Mumbai, India.ORCID 0000-0002-5154-9031
Hemant Kumar PrajapatiDepartment of Biosciences and Bioengineering, Indian Institute of Technology, Bombay, Powai, Mumbai, India.
Anjali MahilkarDepartment of Chemical Engineering, Indian Institute of Technology, Bombay, Powai, Mumbai, India.ORCID 0000-0002-6036-838X
Chien-Hui MaSection of Molecular Genetics and Microbiology, University of Texas, Austin, Texas, United States of America.ORCID 0000-0001-8753-8556
Priyanka MittalDepartment of Biosciences and Bioengineering, Indian Institute of Technology, Bombay, Powai, Mumbai, India.
Makkuni JayaramSection of Molecular Genetics and Microbiology, University of Texas, Austin, Texas, United States of America.ORCID 0000-0001-9640-6264
Santanu K GhoshDepartment of Biosciences and Bioengineering, Indian Institute of Technology, Bombay, Powai, Mumbai, India.ORCID 0000-0002-3190-8084
Indian Institute of Technology Bombay · INThe University of Texas at Austin · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Equipartitioning by chromosome association and copy number correction by DNA amplification are at the heart of the evolutionary success of the selfish yeast 2-micron plasmid. The present analysis reveals frequent plasmid presence near telomeres (TELs) and centromeres (CENs) in mitotic cells, with a preference towards the former. Inactivation of Cdc14 causes plasmid missegregation, which is correlated to the non-disjunction of TELs (and of rDNA) under this condition. Induced missegregation of chromosome XII, one of the largest yeast chromosomes which harbors the rDNA array and is highly dependent on the condensin complex for proper disjunction, increases 2-micron plasmid missegregation. This is not the case when chromosome III, one of the smallest chromosomes, is forced to missegregate. Plasmid stability decreases when the condensin subunit Brn1 is inactivated. Brn1 is recruited to the plasmid partitioning locus (STB) with the assistance of the plasmid-coded partitioning proteins Rep1 and Rep2. Furthermore, in a dihybrid assay, Brn1 interacts with Rep1-Rep2. Taken together, these findings support a role for condensin and/or condensed chromatin in 2-micron plasmid propagation. They suggest that condensed chromosome loci are among favored sites utilized by the plasmid for its chromosome-associated segregation. By homing to condensed/quiescent chromosome locales, and not over-perturbing genome homeostasis, the plasmid may minimize fitness conflicts with its host. Analogous persistence strategies may be utilized by other extrachromosomal selfish genomes, for example, episomes of mammalian viruses that hitchhike on host chromosomes for their stable maintenance.

Indexed as

Adenosine TriphosphatasesCell CycleCell Cycle ProteinsCell DivisionCentromereChromosomesChromosome SegregationDNA-Binding ProteinsDNA, FungalDNA ReplicationHeterochromatinMultiprotein ComplexesPlasmidsRepetitive Sequences, Nucleic AcidSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsAdenosine TriphosphatasesCell Cycle Proteinscondensin complexesDNA-Binding ProteinsDNA, FungalHeterochromatinMultiprotein ComplexesSaccharomyces cerevisiae ProteinsTrans-Activators

Identifiers

PMID34270553
PMCPMC8318298
OpenAlexW3180950716

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.