Evidence map›Paper›PMID 34269483›Full record

ArticleThe EMBO journal2021

Cytosolic GDH1 degradation restricts protein synthesis to sustain tumor cell survival following amino acid deprivation.

Jialiang Shao, Tiezhu Shi, Hua Yu, Yufeng Ding, Liping Li, Xiang Wang, Xiongjun Wang

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 32 citations in OpenAlex.

  1. LDH isozymes as targets for cancer therapy.Journal of enzyme inhibition and medicinal chemistry · 2026
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  18. A comparative analysis of fruit fly and human glutamate dehydrogenases inFrontiers in cell and developmental biology · 2023
    Article
  19. Polymorphism and expression ofArchives animal breeding · 2023
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jialiang ShaoDepartment of Urology, Shanghai General Hospital, Shanghai Jiao Tong University, Shanghai, China.
Tiezhu ShiDepartment of Urology, Shanghai General Hospital, Shanghai Jiao Tong University, Shanghai, China.
Hua YuCAS Key Laboratory of Tissue Microenvironment and Tumor, Institute of Nutrition and Health Sciences, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai, China.
Yufeng DingDepartment of Urology, Shanghai General Hospital, Shanghai Jiao Tong University, Shanghai, China.
Liping LiSchool of Life Sciences, Guangzhou University, Guangzhou, China.
Xiang WangDepartment of Urology, Shanghai General Hospital, Shanghai Jiao Tong University, Shanghai, China.
Xiongjun WangCAS Key Laboratory of Tissue Microenvironment and Tumor, Institute of Nutrition and Health Sciences, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai, China.ORCID 0000-0003-3946-5748
Shanghai Jiao Tong University · CNGuangzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mTORC1 pathway plays key roles in regulating various biological processes, including sensing amino acid deprivation and driving expression of ribosomal protein (RP)-coding genes. In this study, we observed that depletion of glutamate dehydrogenase 1 (GDH1), an enzyme that converts glutamate to α-ketoglutarate (αKG), confers resistance to amino acid deprivation on kidney renal clear cell carcinoma (KIRC) cells. Mechanistically, under conditions of adequate nutrition, GDH1 maintains RP gene expression in a manner dependent on its enzymatic activity. Following amino acid deprivation or mTORC1 inhibition, GDH1 translocates from mitochondria to the cytoplasm, where it becomes ubiquitinated and degraded via the E3 ligase RNF213. GDH1 degradation reduces intracellular αKG levels by more than half and decreases the activity of αKG-dependent lysine demethylases (KDMs). Reduced KDM activity in turn leads to increased histone H3 lysine 9 and 27 methylation, further suppressing RP gene expression and preserving nutrition to support cell survival. In summary, our study exemplifies an economical and efficient strategy of solid tumor cells for coping with amino acid deficiency, which might in the future be targeted to block renal carcinoma progression.

Indexed as

Adenosine TriphosphatasesAnimalsCarcinoma, Renal CellCell Cycle ProteinsCell Line, TumorDNA-Binding ProteinsEpithelial CellsFemaleGene Expression Regulation, NeoplasticGlutamate DehydrogenaseGlutamic AcidHistone DemethylasesHumansJumonji Domain-Containing Histone DemethylasesKetoglutaric AcidsKidney NeoplasmsAdenosine TriphosphatasesCell Cycle ProteinsCHFR protein, humanDNA-Binding ProteinsGLUD1 protein, humanGlutamate DehydrogenaseGlutamic AcidHistone DemethylasesJumonji Domain-Containing Histone DemethylasesKDM4A protein, humanKDM6A protein, humanKetoglutaric AcidsNeoplasm ProteinsNuclear ProteinsPoly-ADP-Ribose Binding ProteinsProtein Isoformsribosomal protein L9Ribosomal ProteinsRNA, Small InterferingRNF213 protein, humanTRIM27 protein, humanTripartite Motif ProteinsUbiquitin-Protein Ligasesamino acid deprivationGDH1kidney cancerribosomesαKG

Identifiers

PMID34269483
PMCPMC8521317
OpenAlexW3180316282

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.