ArticleApplications in plant sciences2021
Single-nucleotide polymorphisms that uniquely identify cultivars of avocado (
Article in Applications in plant sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.
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Who cites it
3 citing papers in PubMed.
- Declining Outcrossing Rates Inside Orchard Blocks of 'Maluma' and 'Shepard' Avocado (Plants (Basel, Switzerland) · 2025Article
- SNP markers reveal relationships between fruit paternity, fruit quality and distance from a cross-pollen source in avocado orchards.Scientific reports · 2021Article
- Single-nucleotide polymorphisms that uniquely identify cultivars of avocado (Applications in plant sciences · 2021Article
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
premiseProgeny of avocado (
methodsA double-digest restriction site-associated DNA sequencing (ddRADseq) approach was used to screen 10 avocado cultivars for single-nucleotide polymorphisms (SNPs). The fragments were size selected with Blue Pippin and PCR using universal Illumina primers, and catalog tags were then created with de novo alignment using Stacks software. Catalog tags were tabulated and filtered to identify alleles unique to each cultivar.
resultsA total of 104 million sequences were collected, and 52 homozygous SNPs were identified that uniquely distinguished nine avocado cultivars. The cultivars Carmen Hass and Hass have a strong genetic similarity and no homozygous SNPs distinguishing these cultivars could be identified; therefore, both cultivars were grouped together. DISCUSSION: The resource described here for cultivars of
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