Evidence map›Paper›PMID 34267314›Full record

ArticleCommunications biology2021

Large-scale phenotyping of 1,000 fungal strains for the degradation of non-natural, industrial compounds.

David Navarro, Delphine Chaduli, Sabine Taussac, Laurence Lesage-Meessen, Sacha Grisel, Mireille Haon, Philippe Callac, Régis Courtecuisse, Cony Decock, Joëlle Dupont and 13 more

Abstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Poplar: a phylogenomics pipeline.Bioinformatics advances · 2025
    Article
  7. Article
  8. A time-course analysis ofApplied and environmental microbiology · 2024
    Article
  9. A New Phenolic Acid Decarboxylase from the Brown-Rot FungusBioengineering (Basel, Switzerland) · 2024
    Article
  10. Draft genome sequencing and assembly ofJournal of genomics · 2024
    Article
  11. TheApplied and environmental microbiology · 2023
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. PlasticDB: a database of microorganisms and proteins linked to plastic biodegradation.Database : the journal of biological databases and curation · 2022
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

David NavarroINRAE, Aix Marseille Univ., BBF, UMR1163, Marseille, France. david.navarro@inrae.fr.ORCID 0000-0002-3266-8270
Delphine ChaduliINRAE, Aix Marseille Univ., BBF, UMR1163, Marseille, France.
Sabine TaussacINRAE, Aix Marseille Univ., BBF, UMR1163, Marseille, France.
Laurence Lesage-MeessenINRAE, Aix Marseille Univ., BBF, UMR1163, Marseille, France.
Sacha GriselINRAE, Aix Marseille Univ., BBF, UMR1163, Marseille, France.
Mireille HaonINRAE, Aix Marseille Univ., BBF, UMR1163, Marseille, France.
Philippe CallacINRAE, MYCSA, UR1264, Villenave d'Ornon, France.
Régis CourtecuisseFaculté de Pharmacie Lille, Université de Lille, LGCgE, ER4, Lille, France.
Cony DecockMycothèque de l'Université Catholique de Louvain (MUCL), Earth and Life Institute, Microbiology, Louvain-la-Neuve, Belgium.ORCID 0000-0002-1908-385X
Joëlle DupontInstitut de Systématique, Evolution et Biodiversité, ISYEB - UMR 7205 - CNRS, MNHN, UPMC, EPHE, Muséum National d'Histoire Naturelle, Sorbonne Universités, Paris, France.
Florence Richard-ForgetINRAE, MYCSA, UR1264, Villenave d'Ornon, France.
Jacques FournierLas Muros, Rimont, France.
Jacques GuinberteauINRAE, MYCSA, UR1264, Villenave d'Ornon, France.
Christian LechatAscofrance, Villiers-en-Bois, France.
Pierre-Arthur MoreauFaculté de Pharmacie Lille, Université de Lille, LGCgE, ER4, Lille, France.ORCID 0000-0003-4783-3643
Laetitia Pinson-GadaisINRAE, MYCSA, UR1264, Villenave d'Ornon, France.
Bernard RivoireSociété Linnéenne, Lyon, France.
Lucile SageUniversité Grenoble Alpes, LECA, UMR UGA-USMB-CNRS 5553, CS 40700, Grenoble, France.
Stéphane WeltiFaculté de Pharmacie Lille, Université de Lille, LGCgE, ER4, Lille, France.
Marie-Noëlle RossoINRAE, Aix Marseille Univ., BBF, UMR1163, Marseille, France.
Jean-Guy BerrinINRAE, Aix Marseille Univ., BBF, UMR1163, Marseille, France.ORCID 0000-0001-7570-3745
Bastien BissaroINRAE, Aix Marseille Univ., BBF, UMR1163, Marseille, France. bastien.bissaro@inrae.fr.ORCID 0000-0001-8354-3892
Anne FavelINRAE, Aix Marseille Univ., BBF, UMR1163, Marseille, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fungal biotechnology is set to play a keystone role in the emerging bioeconomy, notably to address pollution issues arising from human activities. Because they preserve biological diversity, Biological Resource Centres are considered as critical infrastructures to support the development of biotechnological solutions. Here, we report the first large-scale phenotyping of more than 1,000 fungal strains with evaluation of their growth and degradation potential towards five industrial, human-designed and recalcitrant compounds, including two synthetic dyes, two lignocellulose-derived compounds and a synthetic plastic polymer. We draw a functional map over the phylogenetic diversity of Basidiomycota and Ascomycota, to guide the selection of fungal taxa to be tested for dedicated biotechnological applications. We evidence a functional diversity at all taxonomic ranks, including between strains of a same species. Beyond demonstrating the tremendous potential of filamentous fungi, our results pave the avenue for further functional exploration to solve the ever-growing issue of ecosystems pollution.

Indexed as

AscomycotaBasidiomycotaBiotechnologyColoring AgentsFungiGenetic VariationGeographyHumansIndustrial MicrobiologyLigninPhenotypePhylogenyPlasticsSpecies SpecificityColoring AgentsLigninlignocellulosePlastics

Identifiers

PMID34267314
PMCPMC8282864

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.