Evidence map›Paper›PMID 34264939›Full record

ArticlePLoS neglected tropical diseases2021

The epidemic of Q fever in 2018 to 2019 in Zhuhai city of China determined by metagenomic next-generation sequencing.

Mingxing Huang, Jinmin Ma, Jun Jiao, Chunna Li, Luan Chen, Zhongyi Zhu, Feng Ruan, Li Xing, Xinchun Zheng, Mengjiao Fu and 14 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
6.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 43 citations in OpenAlex.

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  20. Skin infectome of patients with a tick bite history.Frontiers in cellular and infection microbiology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 4 institutions in 1 country.

Mingxing HuangDepartment of Infectious Diseases, the Fifth Affiliated Hospital of Sun Yat-Sen University (SYSU), Zhuhai, China.
Jinmin MaBGI-Shenzhen, Shenzhen, China.
Jun JiaoState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, 20# Dong-Da-Jie Street, Fengtai, Beijing, China.
Chunna LiDepartment of Infectious Diseases, the Fifth Affiliated Hospital of Sun Yat-Sen University (SYSU), Zhuhai, China.
Luan ChenBGI PathoGenesis Pharmaceutical Technology, BGI-Shenzhen, Shenzhen, China.
Zhongyi ZhuBGI PathoGenesis Pharmaceutical Technology, BGI-Shenzhen, Shenzhen, China.
Feng RuanZhuhai Center for Disease Control and Prevention, Zhuhai, China.
Li XingBGI PathoGenesis Pharmaceutical Technology, BGI-Shenzhen, Shenzhen, China.
Xinchun ZhengDepartment of Infectious Diseases, the Fifth Affiliated Hospital of Sun Yat-Sen University (SYSU), Zhuhai, China.
Mengjiao FuState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, 20# Dong-Da-Jie Street, Fengtai, Beijing, China.
Binyin MaBGI PathoGenesis Pharmaceutical Technology, BGI-Shenzhen, Shenzhen, China.
Chongjie GanDepartment of Infectious Diseases, the Fifth Affiliated Hospital of Sun Yat-Sen University (SYSU), Zhuhai, China.
Yuanchen MaoBGI PathoGenesis Pharmaceutical Technology, BGI-Shenzhen, Shenzhen, China.ORCID 0000-0003-4306-6344
Chongnan ZhangDepartment of Infectious Diseases, the Fifth Affiliated Hospital of Sun Yat-Sen University (SYSU), Zhuhai, China.
Ping SunDepartment of Infectious Diseases, the Fifth Affiliated Hospital of Sun Yat-Sen University (SYSU), Zhuhai, China.
Xi LiuDepartment of Infectious Diseases, the Fifth Affiliated Hospital of Sun Yat-Sen University (SYSU), Zhuhai, China.
Ziliang LinDepartment of Infectious Diseases, the Fifth Affiliated Hospital of Sun Yat-Sen University (SYSU), Zhuhai, China.
Lu ChenBGI PathoGenesis Pharmaceutical Technology, BGI-Shenzhen, Shenzhen, China.
Zhiyu LuState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, 20# Dong-Da-Jie Street, Fengtai, Beijing, China.ORCID 0000-0002-0104-4000
Dongsheng ZhouState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, 20# Dong-Da-Jie Street, Fengtai, Beijing, China.
Bohai WenState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, 20# Dong-Da-Jie Street, Fengtai, Beijing, China.
Weijun ChenBGI PathoGenesis Pharmaceutical Technology, BGI-Shenzhen, Shenzhen, China.
Xiaolu XiongState Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences, 20# Dong-Da-Jie Street, Fengtai, Beijing, China.
Jinyu XiaDepartment of Infectious Diseases, the Fifth Affiliated Hospital of Sun Yat-Sen University (SYSU), Zhuhai, China.ORCID 0000-0001-6583-5381
Sun Yat-sen University · CNBGI Group (China) · CNAcademy of Military Medical Sciences · CNZhuhai People's Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Q fever is a worldwide zoonosis caused by Coxiella burnetii (Cb). From January 2018 to November 2019, plasma samples from 2,382 patients with acute fever of unknown cause at a hospital in Zhuhai city of China were tested using metagenomic next-generation sequencing (mNGS). Of those tested, 138 patients (5.8%) were diagnosed with Q fever based on the presence of Cb genomic DNA detected by mNGS. Among these, 78 cases (56.5%) presented from Nov 2018 to Mar 2019, suggesting an outbreak of Q fever. 55 cases with detailed clinical information that occurred during the outbreak period were used for further analysis. The vast majority of plasma samples from those Cb-mNGS-positive patients were positive in a Cb-specific quantitative polymerase chain reaction (n = 38) and/or indirect immunofluorescence assay (n = 26). Mobile phone tracing data was used to define the area of infection during the outbreak. This suggested the probable infection source was Cb-infected goats and cattle at the only official authorized slaughterhouse in Zhuhai city. Phylogenic analysis based on genomic sequences indicated Cb strains identified in the patients, goat and cattle were formed a single branch, most closely related to the genomic group of Cb dominated by strains isolated from goats. Our study demonstrates Q fever was epidemic in 2018-2019 in Zhuhai city, and this is the first confirmed epidemic of Q fever in a contemporary city in China.

Indexed as

AdultAnimalsCattleCattle DiseasesChinaCoxiella burnetiiDisease OutbreaksFemaleGoat DiseasesGoatsHigh-Throughput Nucleotide SequencingHumansMaleMetagenomicsMiddle AgedPhylogeny

Identifiers

PMID34264939
PMCPMC8282036
OpenAlexW3182735670

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.