Evidence map›Paper›PMID 34264744›Full record

ArticleJournal of computational biology : a journal of computational molecular cell biology2021

Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data.

Filipp Martin Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I Măndoiu, Bogdan Pasaniuc, Yuri Porozov, Alexander Zelikovsky

Open access · greenAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Journal of computational biology : a journal of computational molecular cell biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Estimating Enzyme Expression and Metabolic Pathway Activity inJournal of computational biology : a journal of computational molecular cell biology · 2025
    Article
  2. Identifying Biomarkers Using Support Vector Machine to Understand the Racial Disparity in Triple-Negative Breast Cancer.Journal of computational biology : a journal of computational molecular cell biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Filipp Martin RondelDepartment of Computer Science, Georgia State University, Atlanta, Georgia, USA.ORCID 0000-0001-6278-1074
Roya HosseiniDepartment of Computer Science, Georgia State University, Atlanta, Georgia, USA.
Bikram SahooDepartment of Computer Science, Georgia State University, Atlanta, Georgia, USA.
Sergey KnyazevDepartment of Computer Science, Georgia State University, Atlanta, Georgia, USA.
Igor MandricDepartment of Computer Science, Georgia State University, Atlanta, Georgia, USA.
Frank StewartDepartment of Microbiology and Immunology, Montana State University, Bozeman, Montana, USA.
Ion I MăndoiuComputer Science & Engineering Department, University of Connecticut, Storrs, Connecticut, USA.
Bogdan PasaniucDepartment of Human Genetics, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, California, USA.
Yuri PorozovWorld-Class Research Center "Digital biodesign and personalized healthcare," I.M. Sechenov First Moscow State Medical University, Moscow, Russia.
Alexander ZelikovskyDepartment of Computer Science, Georgia State University, Atlanta, Georgia, USA.ORCID 0000-0003-4424-4691
Georgia State University · USSechenov University · RUMontana State University · USUniversity of California, Los Angeles · USUniversity of Connecticut · US

Funding

QUBBD: VIRAL EVOLUTION AND SPREAD OF INFECTIOUS DISEASE IN COMPLEX NETWORK: BIG DATA ANALYSIS AND MODELINGR01EB025022 · NIBIB · GEORGIA STATE UNIVERSITY · PI SKUMS, PAVEL, VANNBERG, FREDRIK · 2017 to 2019
$891k
NIBIB NIH HHS R01 EB025022
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Metabolic Networks and PathwaysAlgorithmsBacteriaGene Expression ProfilingGulf of AmericaLinear ModelsMetagenomicsPlanktonSequence Analysis, RNAenzyme expressionmetatranscriptomemicrobial communityNGSpathway activity level

Identifiers

PMID34264744
PMCPMC8575064
OpenAlexW3178790830

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.