Evidence map›Paper›PMID 34262921›Full record

ArticleFrontiers in medicine2021

Novel Highly Divergent SARS-CoV-2 Lineage With the Spike Substitutions L249S and E484K.

Katherine Laiton-Donato, Jose A Usme-Ciro, Carlos Franco-Muñoz, Diego A Álvarez-Díaz, Hector Alejandro Ruiz-Moreno, Jhonnatan Reales-González, Diego Andrés Prada, Sheryll Corchuelo, Maria T Herrera-Sepúlveda, Julian Naizaque and 5 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Mutation profile of SARS-CoV-2 genome in a sample from the first year of the pandemic in Colombia.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2022
    Article
  4. Review
  5. Characterization of the emerging B.1.621 variant of interest of SARS-CoV-2.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 1 institution in 1 country.

Katherine Laiton-DonatoDirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, Colombia.
Jose A Usme-CiroDirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, Colombia.
Carlos Franco-MuñozDirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, Colombia.
Diego A Álvarez-DíazDirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, Colombia.
Hector Alejandro Ruiz-MorenoDirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, Colombia.
Jhonnatan Reales-GonzálezDirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, Colombia.
Diego Andrés PradaDirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, Colombia.
Sheryll CorchueloDirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, Colombia.
Maria T Herrera-SepúlvedaDirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, Colombia.
Julian NaizaqueDirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, Colombia.
Gerardo SantamaríaDirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, Colombia.
Magdalena WiesnerDirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, Colombia.
Diana Marcela WalterosDirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, Colombia.
Martha Lucia Ospina MartínezDirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, Colombia.
Marcela Mercado-ReyesDirección de Investigación en Salud Pública, Instituto Nacional de Salud, Bogotá, Colombia.
Instituto Nacional de Salud · CO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

COVID-19 pandemics has led to genetic diversification of SARS-CoV-2 and the appearance of variants with potential impact in transmissibility and viral escape from acquired immunity. We report a new and highly divergent lineage containing 21 distinctive mutations (10 non-synonymous, eight synonymous, and three substitutions in non-coding regions). The amino acid changes L249S and E484K located at the CTD and RBD of the Spike protein could be of special interest due to their potential biological role in the virus-host relationship. Further studies are required for monitoring the epidemiologic impact of this new lineage.

Indexed as

COVID-19lineageSARS-CoV-2spikevariant of interest

Identifiers

PMID34262921
PMCPMC8273171
OpenAlexW3177089986

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.