Evidence map›Paper›PMID 34262183›Full record

ArticleNature structural & molecular biology2021

Mechanistic insight into substrate processing and allosteric inhibition of human p97.

Man Pan, Yuanyuan Yu, Huasong Ai, Qingyun Zheng, Yuan Xie, Lei Liu, Minglei Zhao

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Nature structural & molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
7.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 91 citations in OpenAlex.

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  18. PEX1The Journal of biological chemistry · 2025
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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Man Pan *Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL, USA. panm@uchicago.edu.ORCID http://orcid.org/0000-0001-7216-8193
Yuanyuan Yu *Department of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL, USA.
Huasong AiTsinghua-Peking Center for Life Sciences, Department of Chemistry, Tsinghua University, Beijing, China.
Qingyun ZhengTsinghua-Peking Center for Life Sciences, Department of Chemistry, Tsinghua University, Beijing, China.
Yuan XieDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0001-5105-7136
Lei LiuTsinghua-Peking Center for Life Sciences, Department of Chemistry, Tsinghua University, Beijing, China. lliu@mail.tsinghua.edu.cn.ORCID http://orcid.org/0000-0001-6290-8602
Minglei ZhaoDepartment of Biochemistry and Molecular Biology, The University of Chicago, Chicago, IL, USA. mlzhao@uchicago.edu.ORCID http://orcid.org/0000-0001-5832-6060
University of Chicago · USCenter for Life Sciences · CNKing Center · USUniversity of Illinois Chicago · US

Funding

NCI NIH HHS HHSN261200800001E
6 · The paper itself

Abstract

p97 processes ubiquitinated substrates and plays a central role in cellular protein homeostasis. Here, we report a series of cryo-EM structures of the substrate-engaged human p97 complex with resolutions ranging from 2.9 to 3.8 Å that captured 'power-stroke'-like motions of both the D1 and D2 ATPase rings of p97. A key feature of these structures is the critical conformational changes of the intersubunit signaling (ISS) motifs, which tighten the binding of nucleotides and neighboring subunits and contribute to the spiral staircase conformation of the D1 and D2 rings. In addition, we determined the cryo-EM structure of human p97 in complex with NMS-873, a potent p97 inhibitor, at a resolution of 2.4 Å. The structures showed that NMS-873 binds at a cryptic groove in the D2 domain and interacts with the ISS motif, preventing its conformational change and thus blocking substrate translocation allosterically.

Indexed as

Protein FoldingAcetanilidesAdenosine TriphosphateAnimalsBenzothiazolesCryoelectron MicroscopyEndoplasmic ReticulumEndoplasmic Reticulum-Associated DegradationHumansIntracellular Signaling Peptides and ProteinsNuclear ProteinsProteasome Endopeptidase ComplexProtein ConformationProteostasisSignal TransductionUbiquitinated ProteinsAcetanilidesAdenosine TriphosphateBenzothiazolesIntracellular Signaling Peptides and ProteinsNMS-873NPLOC4 protein, humanNuclear ProteinsProteasome Endopeptidase ComplexUbiquitinated ProteinsUFD1 protein, humanValosin Containing ProteinVCP protein, human

Identifiers

PMID34262183
OpenAlexW3182972792

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.