Evidence map›Paper›PMID 34262135›Full record

ArticleMolecular psychiatry2021

A loss-of-function variant in SUV39H2 identified in autism-spectrum disorder causes altered H3K9 trimethylation and dysregulation of protocadherin β-cluster genes in the developing brain.

Shabeesh Balan, Yoshimi Iwayama, Tetsuo Ohnishi, Mikiko Fukuda, Atsuko Shirai, Ayumi Yamada, Sara Weirich, Maren Kirstin Schuhmacher, Kalarickal Vijayan Dileep, Toshihiro Endo and 18 more

Abstract read
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In one paragraph

Article in Molecular psychiatry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

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  8. Chromatin modifiers in neurodevelopment.Frontiers in molecular neuroscience · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 13 institutions in 4 countries.

Shabeesh BalanLaboratory for Molecular Psychiatry, RIKEN Center for Brain Science, Wako, Saitama, Japan. shabeeshbalan@riken.jp.ORCID http://orcid.org/0000-0002-1098-1290
Yoshimi IwayamaLaboratory for Molecular Psychiatry, RIKEN Center for Brain Science, Wako, Saitama, Japan.
Tetsuo OhnishiLaboratory for Molecular Psychiatry, RIKEN Center for Brain Science, Wako, Saitama, Japan.ORCID http://orcid.org/0000-0002-6696-9725
Mikiko FukudaCellular Memory Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama, Japan.
Atsuko ShiraiCellular Memory Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama, Japan.
Ayumi YamadaCellular Memory Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama, Japan.
Sara WeirichDepartment of Biochemistry, Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 31, Stuttgart, Germany.
Maren Kirstin SchuhmacherDepartment of Biochemistry, Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 31, Stuttgart, Germany.
Kalarickal Vijayan DileepLaboratory for Structural Bioinformatics, RIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa, Japan.
Toshihiro EndoPhenovance Research and Technology LLC, Kashiwa, Chiba, Japan.
Yasuko HisanoLaboratory for Molecular Psychiatry, RIKEN Center for Brain Science, Wako, Saitama, Japan.
Kaoru KotoshibaCellular Memory Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama, Japan.
Tomoko ToyotaLaboratory for Molecular Psychiatry, RIKEN Center for Brain Science, Wako, Saitama, Japan.
Takeshi OtowaDepartment of Neuropsychiatry, NTT Medical Center Tokyo, Tokyo, Japan.
Hitoshi KuwabaraDepartment of Psychiatry, Hamamatsu University School of Medicine, Hamamatsu, Shizuoka, Japan.
Mamoru TochigiDepartment of Neuropsychiatry, Teikyo University School of Medicine, Tokyo, Japan.
Akiko WatanabeLaboratory for Molecular Psychiatry, RIKEN Center for Brain Science, Wako, Saitama, Japan.
Hisako OhbaLaboratory for Molecular Psychiatry, RIKEN Center for Brain Science, Wako, Saitama, Japan.
Motoko MaekawaLaboratory for Molecular Psychiatry, RIKEN Center for Brain Science, Wako, Saitama, Japan.
Manabu ToyoshimaLaboratory for Molecular Psychiatry, RIKEN Center for Brain Science, Wako, Saitama, Japan.
Tsukasa SasakiLaboratory of Health Education, Graduate School of Education, The University of Tokyo, Tokyo, Japan.
Kazuhiko NakamuraDepartment of Neuropsychiatry, Hirosaki University School of Medicine, Hirosaki, Aomori, Japan.
Masatsugu TsujiiFaculty of Contemporary Sociology, Chukyo University, Toyota, Aichi, Japan.
Hideo MatsuzakiResearch Center for Child Mental Development, University of Fukui, Yoshida-gun, Fukui, Japan.ORCID http://orcid.org/0000-0002-6869-1261
Kam Y J ZhangLaboratory for Structural Bioinformatics, RIKEN Center for Biosystems Dynamics Research, Yokohama, Kanagawa, Japan.ORCID http://orcid.org/0000-0002-9282-8045
Albert JeltschDepartment of Biochemistry, Institute of Biochemistry and Technical Biochemistry, University of Stuttgart, Allmandring 31, Stuttgart, Germany.ORCID http://orcid.org/0000-0001-6113-9290
Yoichi ShinkaiCellular Memory Laboratory, RIKEN Cluster for Pioneering Research, Wako, Saitama, Japan. yshinkai@riken.jp.
Takeo YoshikawaLaboratory for Molecular Psychiatry, RIKEN Center for Brain Science, Wako, Saitama, Japan. takeo.yoshikawa@riken.jp.ORCID http://orcid.org/0000-0003-2791-6679
RIKEN Center for Brain Science · JPRIKEN · JPUniversity of Stuttgart · DERIKEN Center for Biosystems Dynamics Research · JPChukyo University · JPHamamatsu University School of Medicine · JPHirosaki University · JPJapan Graduate School of Education University · JPNTT Medical Center · JPPioneer (United States) · USTeikyo University · JPTokyo Medical and Dental University · JPUniversity of Fukui · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent evidence has documented the potential roles of histone-modifying enzymes in autism-spectrum disorder (ASD). Aberrant histone H3 lysine 9 (H3K9) dimethylation resulting from genetic variants in histone methyltransferases is known for neurodevelopmental and behavioral anomalies. However, a systematic examination of H3K9 methylation dynamics in ASD is lacking. Here we resequenced nine genes for histone methyltransferases and demethylases involved in H3K9 methylation in individuals with ASD and healthy controls using targeted next-generation sequencing. We identified a novel rare variant (A211S) in the SUV39H2, which was predicted to be deleterious. The variant showed strongly reduced histone methyltransferase activity in vitro. In silico analysis showed that the variant destabilizes the hydrophobic core and allosterically affects the enzyme activity. The Suv39h2-KO mice displayed hyperactivity and reduced behavioral flexibility in learning the tasks that required complex behavioral adaptation, which is relevant for ASD. The Suv39h2 deficit evoked an elevated expression of a subset of protocadherin β (Pcdhb) cluster genes in the embryonic brain, which is attributable to the loss of H3K9 trimethylation (me3) at the gene promoters. Reduced H3K9me3 persisted in the cerebellum of Suv39h2-deficient mice to an adult stage. Congruently, reduced expression of SUV39H1 and SUV39H2 in the postmortem brain samples of ASD individuals was observed, underscoring the role of H3K9me3 deficiency in ASD etiology. The present study provides direct evidence for the role of SUV39H2 in ASD and suggests a molecular cascade of SUV39H2 dysfunction leading to H3K9me3 deficiency followed by an untimely, elevated expression of Pcdhb cluster genes during early neurodevelopment.

Indexed as

Autistic DisorderAnimalsBrainHistone-Lysine N-MethyltransferaseHistonesMiceProtocadherinsHistone-Lysine N-MethyltransferaseHistonesProtocadherinsSuv39h2 protein, mouse

Identifiers

PMID34262135
OpenAlexW3180247914

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.