Evidence map›Paper›PMID 34259890›Full record

ArticlePlant cell reports2021

Transcriptome profiling reveals key genes in regulation of the tepal trichome development in Lilium pumilum D.C.

Yin Xin, Wenqiang Pan, Xi Chen, Yixin Liu, Mingfang Zhang, Xuqing Chen, Fengping Yang, Jingru Li, Jian Wu, Yunpeng Du and 1 more

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Article in Plant cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Yin Xin *Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture and Landscape Architecture, China Agricultural University, Beijing, 100193, China.
Wenqiang Pan *Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture and Landscape Architecture, China Agricultural University, Beijing, 100193, China.
Xi Chen *Key Laboratory of Urban Agriculture (North), Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Agro-Biotechnology Research Center, Ministry of Agriculture, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
Yixin LiuKey Laboratory of Urban Agriculture (North), Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Agro-Biotechnology Research Center, Ministry of Agriculture, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
Mingfang ZhangKey Laboratory of Urban Agriculture (North), Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Agro-Biotechnology Research Center, Ministry of Agriculture, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
Xuqing ChenKey Laboratory of Urban Agriculture (North), Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Agro-Biotechnology Research Center, Ministry of Agriculture, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
Fengping YangKey Laboratory of Urban Agriculture (North), Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Agro-Biotechnology Research Center, Ministry of Agriculture, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China.
Jingru LiBeijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture and Landscape Architecture, China Agricultural University, Beijing, 100193, China.
Jian WuBeijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture and Landscape Architecture, China Agricultural University, Beijing, 100193, China. jianwu@cau.edu.cn.
Yunpeng DuKey Laboratory of Urban Agriculture (North), Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Agro-Biotechnology Research Center, Ministry of Agriculture, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China. dyp_851212@126.com.ORCID http://orcid.org/0000-0001-7188-1309
Xiuhai ZhangKey Laboratory of Urban Agriculture (North), Beijing Key Laboratory of Agricultural Genetic Resources and Biotechnology, Beijing Agro-Biotechnology Research Center, Ministry of Agriculture, Beijing Academy of Agriculture and Forestry Sciences, Beijing, 100097, China. zhangxuhai@baafs.net.cn.

Funding

111 Project of the Ministry of Education B17043Construction of Beijing Science and Technology Innovation and Service Capacity in Top Subjects CEFF-PXM2019_014207_000032National Natural Science Foundation of China 31601781National Natural Science Foundation of China 31701952Natural Science Foundation of Beijing Municipality 6212012The special projects for capacity-building in scientific and technological innovation of Beijing Academy of Agriculture and Forestry KJCX20200103The Youth Fund Project of Beijing Academy of Agriculture and Forestry QNJJ201910
6 · The paper itself

Abstract

key messageA number of potential genes and pathways involved in tepal trichome development were identified in a natural lily mutant by transcriptome analysis and were confirmed with trichome and trichomeless species. Trichome is a specialized structure found on the surface of the plant with an important function in survival against abiotic and biotic stress. It is also an important economic trait in crop breeding. Extensive research has investigated the foliar trichome in model plants (Arabidopsis and tomato). However, the developmental mechanism of tepal trichome remains elusive. Lilium pumilum is an edible ornamental bulb and a good breeding parent possessing cold and salt-alkali resistance. Here, we found a natural mutant of Lilium pumilum grown on a highland whose tepals are covered by trichomes. Our data indicate that trichomes of the mutant are multicellular and branchless. Notably, stomata are also developed on the tepal of the mutant as well, suggesting there may be a correlation between trichome and stomata regulation. Furthermore, we isolated 27 differentially expressed genes (DEGs) by comparing the transcriptome profiling between the natural mutant and the wild type. These 27 genes belong to 4 groups: epidermal cell cycle and division, trichome morphogenesis, stress response, and transcription factors. Quantitative real-time PCR in Lilium pumilum (natural mutant and the wild type) and other lily species (Lilium leichtlinii var. maximowiczii/trichome; Lilium davidii var. willmottiae/, trichomeless) confirmed the validation of RNA-seq data and identified several trichome-related genes.

Indexed as

Gene Expression ProfilingGene Expression Regulation, PlantGene OntologyLiliumMicroscopy, Electron, TransmissionMutationPlant CellsPlant ProteinsReproducibility of ResultsTranscription FactorsTrichomesPlant ProteinsTranscription FactorsLilium pumilumLilyTepalTranscriptomeTrichome

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.