Evidence map›Paper›PMID 34259165›Full record

ArticleJMIR research protocols2021

Rapid Detection of Extensively Drug-Resistant Tuberculosis in Clinical Samples Using a Novel Tabletop Platform: Protocol for a Prospective Clinical Study.

Naomi Hillery, Marva Seifert, Donald G Catanzaro, Symone McKinnon, Rebecca E Colman, Peter G Chiles, Dumitru Chesov, Nelly Ciobanu, Christopher Hagan, Valeriu Crudu and 2 more

Open access · goldAbstract read
In one paragraph

Article in JMIR research protocols, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 56% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Detecting rifampin and isoniazid resistance inJournal of clinical tuberculosis and other mycobacterial diseases · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Naomi HilleryUniversity of California, San Diego, La Jolla, CA, United States.ORCID https://orcid.org/0000-0002-6471-0306
Marva SeifertUniversity of California, San Diego, La Jolla, CA, United States.ORCID https://orcid.org/0000-0002-7554-6396
Donald G CatanzaroUniversity of Arkansas, Fayetteville, AR, United States.ORCID https://orcid.org/0000-0003-1760-0574
Symone McKinnonUniversity of California, San Diego, La Jolla, CA, United States.ORCID https://orcid.org/0000-0002-3328-0163
Rebecca E ColmanUniversity of California, San Diego, La Jolla, CA, United States.ORCID https://orcid.org/0000-0002-6854-2100
Peter G ChilesUniversity of California, San Diego, La Jolla, CA, United States.ORCID https://orcid.org/0000-0002-9112-9189
Dumitru ChesovNicolae Testemitanu State University of Medicine and Pharmacy, Chisinau, Republic of Moldova.ORCID https://orcid.org/0000-0001-6203-5020
Nelly CiobanuNicolae Testemitanu State University of Medicine and Pharmacy, Chisinau, Republic of Moldova.ORCID https://orcid.org/0000-0003-1032-0617
Christopher HaganUniversity of California, San Diego, La Jolla, CA, United States.ORCID https://orcid.org/0000-0002-9439-4543
Valeriu CruduNicolae Testemitanu State University of Medicine and Pharmacy, Chisinau, Republic of Moldova.ORCID https://orcid.org/0000-0001-5059-8002
Antonino CatanzaroUniversity of California, San Diego, La Jolla, CA, United States.ORCID https://orcid.org/0000-0002-1237-1744
Timothy C RodwellUniversity of California, San Diego, La Jolla, CA, United States.ORCID https://orcid.org/0000-0003-2779-3197
University of California San Diego · USPhthisiopneumology Institute "Chiril Draganiuc" · MDNicolae Testemițanu State University of Medicine and Pharmacy · MDUniversity of Arkansas at Fayetteville · US

Funding

UC San Diego Clinical and Translational Research InstituteUL1TR001442 · NCATS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FIRESTEIN, GARY S, HOGARTH, MICHAEL · 2015 to 2024
$88.3M
VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI David Mitchell Smith · 1994 to 2026
$78.4M
An Integrated Tabletop Platform for Rapid Detection of XDR-TB in Clinical SamplesR01AI111435 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RODWELL, TIMOTHY CHARLES · 2014 to 2018
$5.4M
A low-cost instrument for nucleic acid isolation.R44GM103053 · NIGMS · AKONNI BIOSYSTEMS, INC. · PI CHANDLER, DARRELL P, COONEY, CHRISTOPHER GERARD · 2015 to 2016
$1.5M
Culture-free next generation sequencing for rapid detection of drug-resistant tuberculosisR21AI135756 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI RODWELL, TIMOTHY CHARLES · 2018 to 2019
$500k
NCATS NIH HHS UL1 TR001442NIAID NIH HHS P30 AI036214NIAID NIH HHS R01 AI111435NIAID NIH HHS R21 AI135756NIGMS NIH HHS R44 GM103053
6 · The paper itself

Abstract

backgroundThe lack of accurate and efficient diagnostic devices for extensively drug-resistant tuberculosis (XDR-TB) makes it a severe threat to global public health. A prospective clinical study in an intended-use cohort was designed to evaluate the Akonni Biosystems XDR-TB TruArray and lateral flow cell (XDR-LFC) to address this gap in tuberculosis diagnostics.

objectiveThis paper presents the protocol for a study that aims to document the conceptualization and design of this evaluation method for early dissemination while data collection and analysis are ongoing.

methodsThe clinical study was conducted in three phases. The first phase was to observe changes in bacterial load and culture positivity in patient sputa over time and better understand the diversity of prospective clinical samples. The second phase was to prospectively collect clinical samples for sensitivity and specificity testing of the Akonni Biosystems XDR-LFC device. Lastly, the third phase was to explore the anti-TB drug concentrations in serum throughout the drug-resistant tuberculosis treatment.

resultsThe methodology described includes the study design, laboratory sample handling, data collection, and the protection elements of human subjects of this clinical study to evaluate a potential new XDR-TB diagnostic device. A total of 664 participants were enrolled across the three phases. The implemented complex systems facilitated a thorough clinical data collection for an objective evaluation of the device. The study is closed to recruitment. The follow-up data collection and analysis are in progress.

conclusionsThis paper outlined a prospective cohort study protocol to evaluate a rapid XDR-TB detection device, which may be informative for other researchers with similar goals. INTERNATIONAL REGISTERED REPORT IDENTIFIER (IRRID): DERR1-10.2196/26748.

Indexed as

diagnosticdrug-resistantdrug susceptibility testingextensively drug-resistantprospective cohort studyprotocolrapid treatment methodstuberculosis

Identifiers

PMID34259165
PMCPMC8319779
OpenAlexW3165494139

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.