Evidence map›Paper›PMID 34258599›Full record

ArticleSTAR protocols2021

Timesias: A machine learning pipeline for predicting outcomes from time-series clinical records.

Hanrui Zhang, Daiyao Yi, Yuanfang Guan

Abstract read
In one paragraph

Article in STAR protocols, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Hanrui ZhangDepartment of Computational Medicine and Bioinformatics, Michigan Medicine, University of Michigan, Ann Arbor, MI, USA.
Daiyao YiDepartment of Computational Medicine and Bioinformatics, Michigan Medicine, University of Michigan, Ann Arbor, MI, USA.
Yuanfang GuanDepartment of Computational Medicine and Bioinformatics, Michigan Medicine, University of Michigan, Ann Arbor, MI, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The prediction of outcomes is a critical part of the clinical surveillance for hospitalized patients. Here, we present Timesias, a machine learning pipeline which predicts outcomes from real-time sequential clinical data. The strategy implemented in Timesias is the first-place solution in the crowd-sourcing DII (discover, innovate, impact) National Data Science Challenge involving more than 100,000 patients, achieving 0.85 as evaluated by AUROC (area under receiver operator characteristic curve) in predicting the early onset of sepsis status. Timesias is freely available via PyPI and GitHub. For complete details on the use and execution of this protocol, please refer to Guan et al. (2021).

Indexed as

Machine LearningMedical RecordsOutcome Assessment, Health CareAlgorithmsHumansPrognosisTime FactorsBioinformaticsClinical ProtocolHealth Sciences

Identifiers

PMID34258599
PMCPMC8260877

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.