Evidence map›Paper›PMID 34257283›Full record

ArticleNature communications2021

Targeting KRAS4A splicing through the RBM39/DCAF15 pathway inhibits cancer stem cells.

Wei-Ching Chen, Minh D To, Peter M K Westcott, Reyno Delrosario, Il-Jin Kim, Mark Philips, Quan Tran, Saumya R Bollam, Hani Goodarzi, Nora Bayani and 2 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 47 citations in OpenAlex.

  1. Trial
  2. Review
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  5. Article
  6. KRAS4B is required for placental development.Cellular and molecular life sciences : CMLS · 2025
    Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Targeting RNA splicing modulation: new perspectives for anticancer strategy?Journal of experimental & clinical cancer research : CR · 2025
    Review
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  15. Review
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Wei-Ching Chen *UCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, CA, USA.
Minh D To *UCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, CA, USA.ORCID 0000-0002-1327-6239
Peter M K Westcott *UCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, CA, USA.
Reyno DelrosarioUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, CA, USA.
Il-Jin KimGuardant Health, Redwood City, California, USA.
Mark PhilipsNYU Cancer Institute, NYU School of Medicine, New York, NY, USA.ORCID 0000-0002-1179-8156
Quan TranUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, CA, USA.
Saumya R BollamUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, CA, USA.ORCID 0000-0002-6903-4618
Hani GoodarziDepartment of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, USA.ORCID 0000-0002-9648-8949
Nora BayaniUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, CA, USA.
Olga MirzoevaUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, CA, USA.ORCID 0000-0002-5564-1564
Allan BalmainUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, CA, USA. allan.balmain@ucsf.edu.ORCID 0000-0001-6549-7861
UCSF Helen Diller Family Comprehensive Cancer Center · USUniversity of California, San Francisco · USGuardant (United States) · USNew York University · US

Funding

Systems genetics analysis of tumor evolution in the mouseR35CA210018 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ALLAN BALMAIN · 2017 to 2026
$8.0M
PHARMACEUTICAL SCIENCES AND PHARMACOGENOMICST32GM007175 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI AHITUV, NADAV, KROETZ, DEANNA L · 1985 to 2021
$7.1M
PREDOCTORAL TRAINING IN BIOMEDICAL SCIENCEST32GM008568 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ANSEL, KARL MARK · 1995 to 2019
$6.3M
Integrating targeted and immunotherapy to treat genetically heterogeneous cancersU01CA217864 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BALMAIN, ALLAN, KRUMMEL, MATTHEW F · 2017 to 2021
$5.1M
Genetic network analysis of cancer targetsU01CA176287 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WEISS, WILLIAM A · 2013 to 2016
$1.2M
Genetic analysis of ras mutation specificity in skin and lung cancerR01CA184510 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BALMAIN, ALLAN · 2015 to 2017
$1.1M
NCI NIH HHS R01 CA184510NCI NIH HHS R35 CA210018NCI NIH HHS U01 CA176287NCI NIH HHS U01 CA217864NIGMS NIH HHS T32 GM007175NIGMS NIH HHS T32 GM008568
6 · The paper itself

Abstract

The commonly mutated human KRAS oncogene encodes two distinct KRAS4A and KRAS4B proteins generated by differential splicing. We demonstrate here that coordinated regulation of both isoforms through control of splicing is essential for development of Kras mutant tumors. The minor KRAS4A isoform is enriched in cancer stem-like cells, where it responds to hypoxia, while the major KRAS4B is induced by ER stress. KRAS4A splicing is controlled by the DCAF15/RBM39 pathway, and deletion of KRAS4A or pharmacological inhibition of RBM39 using Indisulam leads to inhibition of cancer stem cells. Our data identify existing clinical drugs that target KRAS4A splicing, and suggest that levels of the minor KRAS4A isoform in human tumors can be a biomarker of sensitivity to some existing cancer therapeutics.

Indexed as

A549 CellsAnimalsBlotting, WesternCell ProliferationFlow CytometryHeterograftsHumansIntracellular Signaling Peptides and ProteinsMiceMice, KnockoutNeoplastic Stem CellsPolymerase Chain ReactionProto-Oncogene Proteins p21(ras)RNA-Binding ProteinsDCAF15 protein, humanHCC1 autoantigenIntracellular Signaling Peptides and ProteinsKRAS protein, humanProto-Oncogene Proteins p21(ras)RNA-Binding Proteins

Identifiers

PMID34257283
PMCPMC8277813
OpenAlexW3183053663

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.