Evidence map›Paper›PMID 34255807›Full record

ArticlePLoS pathogens2021

Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints.

Kentaro Tohma, Cara J Lepore, Magaly Martinez, Juan I Degiuseppe, Pattara Khamrin, Mayuko Saito, Holger Mayta, Amy U Amanda Nwaba, Lauren A Ford-Siltz, Kim Y Green and 7 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 1 synthesis or guideline pooled it, 74 citations in OpenAlex.

  1. Pooled it
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  6. Phylogenetic Analyses ofMicroorganisms · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 8 institutions in 6 countries.

Kentaro TohmaDivision of Viral Products, CBER, FDA, Silver Spring, Maryland, United States of America.ORCID 0000-0002-0456-9355
Cara J LeporeDivision of Viral Products, CBER, FDA, Silver Spring, Maryland, United States of America.ORCID 0000-0001-9349-3155
Magaly MartinezDivision of Viral Products, CBER, FDA, Silver Spring, Maryland, United States of America.
Juan I DegiuseppeINEI-ANLIS, Ministry of Health, Buenos Aires, Argentina.ORCID 0000-0002-2181-7795
Pattara KhamrinDepartment of Microbiology, Faculty of Medicine, Chiang Mai University, Chiang Mai, Thailand.ORCID 0000-0002-2220-6435
Mayuko SaitoDepartment of Virology, Tohoku University Graduate School of Medicine, Sendai, Japan.
Holger MaytaDepartment of Cellular and Molecular Sciences, Faculty of Sciences, Universidad Peruana Cayetano Heredia, Lima, Peru.ORCID 0000-0001-5306-628X
Amy U Amanda NwabaDivision of Viral Products, CBER, FDA, Silver Spring, Maryland, United States of America.ORCID 0000-0002-8102-4236
Lauren A Ford-SiltzDivision of Viral Products, CBER, FDA, Silver Spring, Maryland, United States of America.ORCID 0000-0002-6841-4678
Kim Y GreenLaboratory of Infectious Diseases, NIAID, NIH, Bethesda, Maryland, United States of America.ORCID 0000-0002-8189-7352
Maria E GaleanoIICS, National University of Asuncion, Asuncion, Paraguay.
Mirko ZimicDepartment of Cellular and Molecular Sciences, Faculty of Sciences, Universidad Peruana Cayetano Heredia, Lima, Peru.ORCID 0000-0002-7203-8847
Juan A StupkaINEI-ANLIS, Ministry of Health, Buenos Aires, Argentina.ORCID 0000-0002-8539-5763
Robert H GilmanDepartment of International Health, Johns Hopkins University Bloomberg School of Public Health, Baltimore, Maryland, United States of America.ORCID 0000-0002-9037-0712
Niwat ManeekarnDepartment of Microbiology, Faculty of Medicine, Chiang Mai University, Chiang Mai, Thailand.
Hiroshi UshijimaDivision of Microbiology, Department of Pathology and Microbiology, Nihon University School of Medicine, Tokyo, Japan.ORCID 0000-0003-4378-3861
Gabriel I ParraDivision of Viral Products, CBER, FDA, Silver Spring, Maryland, United States of America.ORCID 0000-0002-1102-4740
Administración Nacional de Laboratorios e Institutos de Salud · ARChiang Mai University · THUniversidad Nacional de Asunción · PYUniversidad Peruana Cayetano Heredia · PEJohns Hopkins University · USNational Institutes of Health · USNihon University · JPTohoku University · JP

Funding

Noroviruses and Epidemic GastroenteritisZIAAI000897 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI GREEN, KIM Y. · 2009 to 2025
$29.6M
6 · The paper itself

Abstract

Norovirus is a major cause of acute gastroenteritis worldwide. Over 30 different genotypes, mostly from genogroup I (GI) and II (GII), have been shown to infect humans. Despite three decades of genome sequencing, our understanding of the role of genomic diversification across continents and time is incomplete. To close the spatiotemporal gap of genomic information of human noroviruses, we conducted a large-scale genome-wide analyses that included the nearly full-length sequencing of 281 archival viruses circulating since the 1970s in over 10 countries from four continents, with a major emphasis on norovirus genotypes that are currently underrepresented in public genome databases. We provided new genome information for 24 distinct genotypes, including the oldest genome information from 12 norovirus genotypes. Analyses of this new genomic information, together with those publicly available, showed that (i) noroviruses evolve at similar rates across genomic regions and genotypes; (ii) emerging viruses evolved from transiently-circulating intermediate viruses; (iii) diversifying selection on the VP1 protein was recorded in genotypes with multiple variants; (iv) non-structural proteins showed a similar branching on their phylogenetic trees; and (v) contrary to the current understanding, there are restrictions on the ability to recombine different genomic regions, which results in co-circulating populations of viruses evolving independently in human communities. This study provides a comprehensive genetic analysis of diverse norovirus genotypes and the role of non-structural proteins on viral diversification, shedding new light on the mechanisms of norovirus evolution and transmission.

Indexed as

Biological EvolutionEvolution, MolecularGenome, ViralGenome-Wide Association StudyHumansNorovirus

Identifiers

PMID34255807
PMCPMC8318288
OpenAlexW3178796221

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.