ArticlePloS one2021
Transcriptome profiling unveils the mechanism of phenylpropane biosynthesis in rhizome development of Caucasian clover.
Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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12 citing papers in PubMed, 15 citations in OpenAlex.
- The genetic and developmental enigma of rhizomes: crucial traits with limited understanding.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Review
- Analysis of key nodes and metabolic pathways in the protein network of secondary metabolism in Panax quinquefolius L. enhanced by arbuscular mycorrhizal fungi.BMC plant biology · 2026Article
- Characteristics ofFrontiers in microbiology · 2026Article
- Integrated Transcriptome and Metabolome Analysis Elucidates the Defense Mechanisms of Pumpkin Against Gummy Stem Blight.International journal of molecular sciences · 2025Article
- Genome-wide identification of AP2/ERF gene family in Coptis Chinensis Franch reveals its role in tissue-specific accumulation of benzylisoquinoline alkaloids.BMC genomics · 2024Article
- Transcriptome Analysis Reveals POD as an Important Indicator for Assessing Low-Temperature Tolerance in Maize Radicles during Germination.Plants (Basel, Switzerland) · 2024Article
- Integrated Transcriptome and Proteome Analysis Reveals the Regulatory Mechanism of Root Growth by Protein Disulfide Isomerase in Arabidopsis.International journal of molecular sciences · 2024Article
- Comprehensive transcriptome analysis unravels the crucial genes during adventitious root development induced by carbon monoxide in Cucumis sativus L.Molecular biology reports · 2022Article
- Comparative Transcriptome and Anatomic Characteristics of Stems in Two Alfalfa Genotypes.Plants (Basel, Switzerland) · 2022Article
- Integrated Transcriptome and Metabolome Analysis Reveals Key Metabolites Involved inInternational journal of molecular sciences · 2022Article
- Transcriptomic Insights Into Root Development and Overwintering Transcriptional Memory ofFrontiers in plant science · 2022Article
- Multi-Omics Analyses on Maya-Land Tomatoes Shed Light on Plant Strategies to Thrive in High Temperatures.Physiologia plantarumArticle
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Authors and funding
8 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Caucasian clover is the only perennial herb of the genus Leguminous clover with underground rhizomes. However, we know very little about its development process and mechanism. Transcriptome studies were conducted on the roots of Caucasian clover without a rhizome (NR) at the young seedling stage and the fully developed rhizome, including the root neck (R1), main root (R2), horizontal root (R3), and rhizome bud (R4), of the tissues in the mature phase. Compared with the rhizome in the mature phase, NR had 893 upregulated differentially expressed genes (DEGs), most of which were enriched in 'phenylpropanoid biosynthesis', 'phenylalanine metabolism', 'DNA replication' and 'biosynthesis of amino acids'. A higher number of transcription factors (AP2/ERF, C2H2 and FAR1) were found in NR. There were highly expressed genes for R4, such as auxin response factor SAUR, galacturonosyltransferase (GAUT), and sucrose synthase (SUS). Phenylpropanoids are very important for the entire process of rhizome development. We drew a cluster heat map of genes related to the phenylpropanoid biosynthesis pathway, in which the largest number of genes belonged to COMT, and most of them were upregulated in R4.
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