Evidence map›Paper›PMID 34254350›Full record

ArticleThe EMBO journal2021

Fungal phytochrome chromophore biosynthesis at mitochondria.

Christian Streng, Jana Hartmann, Kai Leister, Norbert Krauß, Tilman Lamparter, Nicole Frankenberg-Dinkel, Franco Weth, Martin Bastmeyer, Zhenzhong Yu, Reinhard Fischer

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
  6. Review
  7. Review
  8. Elucidating the origins of phycocyanobilin biosynthesis and phycobiliproteins.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Journal of fungi (Basel, Switzerland) · 2023
    Review
  10. Article
  11. Heme Oxygenase/Carbon Monoxide Participates in the Regulation ofInternational journal of molecular sciences · 2022
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Christian StrengDepartment of Microbiology, Karlsruhe Institute of Technology (KIT) - South Campus, Institute for Applied Biosciences, Karlsruhe, Germany.
Jana HartmannDepartment of Microbiology, University of Kaiserslautern, Kaiserslautern, Germany.
Kai LeisterDepartment of Microbiology, Karlsruhe Institute of Technology (KIT) - South Campus, Institute for Applied Biosciences, Karlsruhe, Germany.ORCID 0000-0003-0717-9923
Norbert KraußKarlsruhe Institute of Technology (KIT) - South Campus, Botanical Institute, Karlsruhe, Germany.ORCID 0000-0002-7128-4632
Tilman LamparterKarlsruhe Institute of Technology (KIT) - South Campus, Botanical Institute, Karlsruhe, Germany.ORCID 0000-0003-4327-9737
Nicole Frankenberg-DinkelDepartment of Microbiology, University of Kaiserslautern, Kaiserslautern, Germany.
Franco WethKarlsruhe Institute of Technology (KIT) - South Campus, Zoological Institute, Karlsruhe, Germany.ORCID 0000-0002-6819-7028
Martin BastmeyerKarlsruhe Institute of Technology (KIT) - South Campus, Zoological Institute, Karlsruhe, Germany.
Zhenzhong YuThe Key Laboratory of Plant Immunity, Jiangsu Provincial Key Lab of Organic Solid Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, National Engineering Research Center for Organic-based Fertilizers, Nanjing Agricultural University, Nanjing, China.ORCID 0000-0003-3748-3053
Reinhard FischerDepartment of Microbiology, Karlsruhe Institute of Technology (KIT) - South Campus, Institute for Applied Biosciences, Karlsruhe, Germany.ORCID 0000-0002-6704-2569
Karlsruhe Institute of Technology · DEUniversity of Kaiserslautern · DENanjing Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mitochondria are essential organelles because of their function in energy conservation. Here, we show an involvement of mitochondria in phytochrome-dependent light sensing in fungi. Phytochrome photoreceptors are found in plants, bacteria, and fungi and contain a linear, heme-derived tetrapyrrole as chromophore. Linearization of heme requires heme oxygenases (HOs) which reside inside chloroplasts in planta. Despite the poor degree of conservation of HOs, we identified two candidates in the fungus Alternaria alternata. Deletion of either one phenocopied phytochrome deletion. The two enzymes had a cooperative effect and physically interacted with phytochrome, suggesting metabolon formation. The metabolon was attached to the surface of mitochondria with a C-terminal anchor (CTA) sequence in HoxA. The CTA was necessary and sufficient for mitochondrial targeting. The affinity of phytochrome apoprotein to HoxA was 57,000-fold higher than the affinity of the holoprotein, suggesting a "kiss-and-go" mechanism for chromophore loading and a function of mitochondria as assembly platforms for functional phytochrome. Hence, two alternative approaches for chromophore biosynthesis and insertion into phytochrome evolved in plants and fungi.

Indexed as

AlternariaFungal ProteinsHemeHomeodomain ProteinsMitochondriaPhytochromeProtein TransportFungal ProteinsHemeHomeodomain ProteinsHoxA proteinPhytochromechromophorehemeheme oxygenasemetabolonphytochrome

Identifiers

PMID34254350
PMCPMC8447599
OpenAlexW3181730576

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.