ArticleAmerican journal of botany2021
Reconstructing Dipsacales phylogeny using Angiosperms353: issues and insights.
Article in American journal of botany, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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14 citing papers in PubMed.
- Simultaneous Inference of Flora-Wide Nuclear and Plastid Phylogenies Using Angiosperms353 Sequence Capture Data.Molecular ecology resources · 2026Article
- Nuclear phylogenomic analysis of Allium (Amaryllidaceae) species from Kazakhstan reveals incomplete lineage sorting and gene flow.BMC plant biology · 2026Article
- Evolutionary history of Australian samphires (Salicornieae, Amaranthaceae).Annals of botany · 2026Article
- An updated phylogeny of Boraginales based on the Angiosperms353 probe set: a roadmap for understanding morphological evolution.Annals of botany · 2025Article
- Complementing model species with model clades.The Plant cell · 2024Review
- Coping with alpine habitats: genomic insights into the adaptation strategies ofHorticulture research · 2024Article
- Phylogenomics of the pantropical Connaraceae: revised infrafamilial classification and the evolution of heterostyly.Plant systematics and evolution = Entwicklungsgeschichte und Systematik der Pflanzen · 2024Article
- The first epiphytic species ofPhytoKeys · 2023Article
- A target capture approach for phylogenomic analyses at multiple evolutionary timescales in rosewoods (Dalbergia spp.) and the legume family (Fabaceae).Molecular ecology resources · 2022Article
- A Bird's Eye View of the Systematics of Convolvulaceae: Novel Insights From Nuclear Genomic Data.Frontiers in plant science · 2022Article
- Characterization of the chloroplast genome of Lonicera ruprechtiana Regel and comparison with other selected species of Caprifoliaceae.PloS one · 2022Article
- Reconstructing Dipsacales phylogeny using Angiosperms353: issues and insights.American journal of botany · 2021Article
- Exploring Angiosperms353: Developing and applying a universal toolkit for flowering plant phylogenomics.Applications in plant sciences · 2021Article
- Advancing phylogenomics in Amaranthaceae sensu stricto: Development and application of a new nuclear target enrichment bait set.Applications in plant sciencesArticle
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6 authors.
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Abstract
premisePhylogenetic relationships within major angiosperm clades are increasingly well resolved, but largely informed by plastid data. Areas of poor resolution persist within the Dipsacales, including placement of Heptacodium and Zabelia, and relationships within the Caprifolieae and Linnaeeae, hindering our interpretation of morphological evolution. Here, we sampled a significant number of nuclear loci using a Hyb-Seq approach and used these data to infer the Dipsacales phylogeny and estimate divergence times.
methodsSampling all major clades within the Dipsacales, we applied the Angiosperms353 probe set to 96 species. Data were filtered based on locus completeness and taxon recovery per locus, and trees were inferred using RAxML and ASTRAL. Plastid loci were assembled from off-target reads, and 10 fossils were used to calibrate dated trees.
resultsVarying numbers of targeted loci and off-target plastomes were recovered from most taxa. Nuclear and plastid data confidently place Heptacodium with Caprifolieae, implying homoplasy in calyx morphology, ovary development, and fruit type. Placement of Zabelia, and relationships within the Caprifolieae and Linnaeeae, remain uncertain. Dipsacales diversification began earlier than suggested by previous angiosperm-wide dating analyses, but many major splitting events date to the Eocene.
conclusionsThe Angiosperms353 probe set facilitated the assembly of a large, single-copy nuclear dataset for the Dipsacales. Nevertheless, many relationships remain unresolved, and resolution was poor for woody clades with low rates of molecular evolution. We favor expanding the Angiosperms353 probe set to include more variable loci and loci of special interest, such as developmental genes, within particular clades.
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