Evidence map›Paper›PMID 34253927›Full record

ArticleNature methods2021

CloudReg: automatic terabyte-scale cross-modal brain volume registration.

Vikram Chandrashekhar, Daniel J Tward, Devin Crowley, Ailey K Crow, Matthew A Wright, Brian Y Hsueh, Felicity Gore, Timothy A Machado, Audrey Branch, Jared S Rosenblum and 2 more

Abstract readLetter
In one paragraph

Article in Nature methods, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. LEARNING ACCURATE RIGID REGISTRATION FOR LONGITUDINAL BRAIN MRI FROM SYNTHETIC DATA.Proceedings. IEEE International Symposium on Biomedical Imaging · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Merged magnetic resonance and light sheet microscopy of the whole mouse brain.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Article
  12. Article
  13. Non-invasiveCell reports methods · 2022
    Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Vikram ChandrashekharCenter for Imaging Science, Johns Hopkins University, Baltimore, MD, USA.
Daniel J TwardDepartment of Computational Medicine and Neurology, University of California Los Angeles, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-4607-6807
Devin CrowleyCenter for Imaging Science, Johns Hopkins University, Baltimore, MD, USA.
Ailey K CrowCNC Program, Stanford University, Stanford, CA, USA.
Matthew A WrightDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA, USA.
Brian Y HsuehCNC Program, Stanford University, Stanford, CA, USA.
Felicity GoreCNC Program, Stanford University, Stanford, CA, USA.
Timothy A MachadoCNC Program, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0003-3762-1460
Audrey BranchDepartment of Psychological and Brain Sciences, Johns Hopkins University, Baltimore, MD, USA.
Jared S RosenblumNeuro-Oncology Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.ORCID http://orcid.org/0000-0001-5941-9082
Karl DeisserothCNC Program, Stanford University, Stanford, CA, USA.ORCID http://orcid.org/0000-0001-9440-3967
Joshua T VogelsteinCenter for Imaging Science, Johns Hopkins University, Baltimore, MD, USA. jovo@jhu.edu.ORCID http://orcid.org/0000-0003-2487-6237

Funding

Tool and Technology Development CoreU19MH114821 · NIMH · COLD SPRING HARBOR LABORATORY · PI MITRA, PARTHA PRATIM · 2017 to 2021
$64.5M
TRANSCRIPTIONAL MECHANISMS OF HIPPOCAMPAL AGINGP01AG009973 · NIA · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI Alfredo Kirkwood · 1991 to 2026
$52.4M
CLARITY: fully-assembled biologyR01MH099647 · NIMH · STANFORD UNIVERSITY · PI DEISSEROTH, KARL A. · 2012 to 2016
$23.0M
Structural and molecular identification of circuitry underlying joint processing of motivation and aversionR37DA035377 · NIDA · STANFORD UNIVERSITY · PI DEISSEROTH, KARL A. · 2013 to 2022
$6.2M
Brain networks in mouse models of agingR01AG066184 · NIA · DUKE UNIVERSITY · PI BADEA, ALEXANDRA · 2019 to 2023
$3.8M
DISSECTION OF THE ROLE OF SEROTONIN CIRCUITS IN REWARD AND AVERSIONK08MH113039 · NIMH · WEILL MEDICAL COLL OF CORNELL UNIV · PI WRIGHT, MATTHEW A · 2017 to 2021
$939k
Characterizing the role of fronto-striatal connectivity in value-based decision-makingK99DA050662 · NIDA · STANFORD UNIVERSITY · PI GORE, FELICITY · 2020 to 2021
$338k
Brainwide Computations Underlying Future Action PlansK99NS116122 · NINDS · STANFORD UNIVERSITY · PI MACHADO, TIMOTHY ALOYSIUS · 2020 to 2021
$246k
NIA NIH HHS P01 AG009973NIA NIH HHS R01 AG066184NIDA NIH HHS K99 DA050662NIDA NIH HHS R37 DA035377NIMH NIH HHS K08 MH113039NIMH NIH HHS R01 MH099647NIMH NIH HHS U19 MH114821NINDS NIH HHS K99 NS116122
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

SoftwareAnimalsBrainBrain MappingComputer SimulationHumansImage Processing, Computer-AssistedMagnetic Resonance Imaging

Identifiers

PMID34253927
PMCPMC8494106

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.