Evidence map›Paper›PMID 34253920›Full record

ArticleNature genetics2021

Genome-scale screens identify factors regulating tumor cell responses to natural killer cells.

Michal Sheffer, Emily Lowry, Nicky Beelen, Minasri Borah, Suha Naffar-Abu Amara, Chris C Mader, Jennifer A Roth, Aviad Tsherniak, Samuel S Freeman, Olga Dashevsky and 21 more

Abstract read
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In one paragraph

Article in Nature genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. NK Cell Activation by Platinum Boosts Immunotherapy in HRAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. The Activity of EGFR CAR NK and CAR T Cells against EGFR Inhibitor-Resistant NSCLC and Drug-Tolerant Persister Cells.Clinical cancer research : an official journal of the American Association for Cancer Research · 2025
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors.

Michal ShefferDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA. Michal_Sheffer@dfci.havard.edu.
Emily LowryDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0003-1036-779X
Nicky BeelenDepartment of Transplantation Immunology, Maastricht University Medical Center+, Maastricht, the Netherlands.
Minasri BorahDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Suha Naffar-Abu AmaraDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.
Chris C MaderBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.
Jennifer A RothBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.
Aviad TsherniakBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-3797-1877
Samuel S FreemanBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-8285-0057
Olga DashevskyDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Sara GandolfiDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Samantha BenderBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.
Jordan G BryanBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-4984-0516
Cong ZhuBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.
Li WangBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.
Ifrah TariqBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0003-0684-8769
Govinda M KamathMicrosoft Research, Cambridge, MA, USA.
Ricardo De Matos SimoesDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Eugen DhimoleaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Channing YuDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0002-3231-2565
Yiguo HuDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0002-3973-2140
Olli DufvaHematology Research Unit Helsinki, Helsinki University Hospital Comprehensive Cancer Center, Helsinki, Finland.ORCID http://orcid.org/0000-0002-8084-0282
Marios GiannakisDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Vasilis SyrgkanisMicrosoft Research, Cambridge, MA, USA.
Ernest FraenkelBroad Institute of Massachusetts Institute of Technology (MIT) and Harvard, Cambridge, MA, USA.ORCID http://orcid.org/0000-0001-9249-8181
Todd GolubDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0003-0113-2403
Rizwan RomeeDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Satu MustjokiHematology Research Unit Helsinki, Helsinki University Hospital Comprehensive Cancer Center, Helsinki, Finland.ORCID http://orcid.org/0000-0002-0816-8241
Aedin C CulhaneDepartment of Data Science, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0002-1395-9734
Lotte WietenDepartment of Transplantation Immunology, Maastricht University Medical Center+, Maastricht, the Netherlands.ORCID http://orcid.org/0000-0002-4503-1623
Constantine S MitsiadesDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA. Constantine_Mitsiades@dfci.harvard.edu.

Funding

Role of Cytokines in Myeloma PathogenesisR01CA050947 · NCI · DANA-FARBER CANCER INSTITUTE · PI ANDERSON, KENNETH C., MITSIADES, CONSTANTINE S. · 1991 to 2018
$5.1M
Analysis of E-selectin Ligands of Human Acute Leukemia Cells and their Biology in LeukemogenesisU01CA225730 · NCI · FLORIDA INTERNATIONAL UNIVERSITY · PI MITSIADES, CONSTANTINE S., SACKSTEIN, ROBERT · 2019 to 2023
$3.0M
NCI NIH HHS R01 CA050947NCI NIH HHS U01 CA225730
6 · The paper itself

Abstract

To systematically define molecular features in human tumor cells that determine their degree of sensitivity to human allogeneic natural killer (NK) cells, we quantified the NK cell responsiveness of hundreds of molecularly annotated 'DNA-barcoded' solid tumor cell lines in multiplexed format and applied genome-scale CRISPR-based gene-editing screens in several solid tumor cell lines, to functionally interrogate which genes in tumor cells regulate the response to NK cells. In these orthogonal studies, NK cell-sensitive tumor cells tend to exhibit 'mesenchymal-like' transcriptional programs; high transcriptional signature for chromatin remodeling complexes; high levels of B7-H6 (NCR3LG1); and low levels of HLA-E/antigen presentation genes. Importantly, transcriptional signatures of NK cell-sensitive tumor cells correlate with immune checkpoint inhibitor (ICI) resistance in clinical samples. This study provides a comprehensive map of mechanisms regulating tumor cell responses to NK cells, with implications for future biomarker-driven applications of NK cell immunotherapies.

Indexed as

Gene Expression Regulation, NeoplasticAllogeneic CellsAnimalsB7 AntigensCell Line, TumorChromatin Assembly and DisassemblyCytotoxicity, ImmunologicCytotoxicity Tests, ImmunologicDrug Resistance, NeoplasmFemaleGenome, HumanHistocompatibility Antigens Class IHLA-E AntigensHumansImmune Checkpoint InhibitorsKiller Cells, NaturalB7 AntigensHistocompatibility Antigens Class IHLA-E AntigensImmune Checkpoint InhibitorsNCR3LG1 protein, human

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.