Evidence map›Paper›PMID 34253873›Full record

ArticleBritish journal of cancer2021

Transcriptome profiles of stem-like cells from primary breast cancers allow identification of ITGA7 as a predictive marker of chemotherapy response.

Noha Gwili, Stacey J Jones, Waleed Al Amri, Ian M Carr, Sarah Harris, Brian V Hogan, William E Hughes, Baek Kim, Fiona E Langlands, Rebecca A Millican-Slater and 8 more

Open access · hybridAbstract read
In one paragraph

Article in British journal of cancer, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 8 institutions in 4 countries.

Noha Gwili *School of Medicine, University of Leeds, Leeds, UK.
Stacey J Jones *School of Medicine, University of Leeds, Leeds, UK.
Waleed Al AmriDepartment of Histopathology and Cytopathology, The Royal Hospital, Muscat, Oman.
Ian M CarrSchool of Medicine, University of Leeds, Leeds, UK.
Sarah HarrisSchool of Physics and Astronomy, University of Leeds, Leeds, UK.
Brian V HoganDepartment of Breast Surgery, Leeds Teaching Hospitals NHS Trust, Leeds, UK.
William E HughesChildren's Medical Research Institute, Westmead, NSW, Australia.
Baek KimDepartment of Breast Surgery, Leeds Teaching Hospitals NHS Trust, Leeds, UK.
Fiona E LanglandsDepartment of Breast Surgery, Bradford Teaching Hospitals NHS Trust, Bradford, UK.
Rebecca A Millican-SlaterDepartment of Histopathology, St. James's University Hospital, Leeds, UK.
Arindam PramanikSchool of Medicine, University of Leeds, Leeds, UK.
James L ThorneSchool of Food Science and Nutrition, University of Leeds, Leeds, UK.ORCID http://orcid.org/0000-0002-3037-8528
Eldo T VergheseDepartment of Histopathology, St. James's University Hospital, Leeds, UK.
Geoff WellsSchool of Pharmacy, University College London, London, UK.
Mervat HamzaPathology Department, Faculty of Medicine, Alexandria University, Alexandria, Egypt.
Layla YounisPathology Department, Faculty of Medicine, Alexandria University, Alexandria, Egypt.
Nevine M F El DeebPathology Department, Faculty of Medicine, Alexandria University, Alexandria, Egypt.
Thomas A HughesSchool of Medicine, University of Leeds, Leeds, UK. t.hughes@leeds.ac.uk.ORCID http://orcid.org/0000-0003-1169-3386
University of Leeds · GBAlexandria University · EGLeeds Teaching Hospitals NHS Trust · GBSt James's University Hospital · GBBradford Teaching Hospitals NHS Foundation Trust · GBChildren's Medical Research Institute · AURoyal Hospital · OMUniversity College London · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBreast cancer stem cells (BCSCs) are drivers of therapy-resistance, therefore are responsible for poor survival. Molecular signatures of BCSCs from primary cancers remain undefined. Here, we identify the consistent transcriptome of primary BCSCs shared across breast cancer subtypes, and we examine the clinical relevance of ITGA7, one of the genes differentially expressed in BCSCs.

methodsPrimary BCSCs were assessed using immunohistochemistry and fluorescently labelled using Aldefluor (n = 17). Transcriptomes of fluorescently sorted BCSCs and matched non-stem cancer cells were determined using RNA-seq (n = 6). ITGA7 expression was examined in breast cancers using immunohistochemistry (n = 305), and its functional role was tested using siRNA in breast cancer cells.

resultsProportions of BCSCs varied from 0 to 9.4%. 38 genes were significantly differentially expressed in BCSCs; genes were enriched for functions in vessel morphogenesis, motility, and metabolism. ITGA7 was found to be significantly downregulated in BCSCs, and low expression significantly correlated with reduced survival in patients treated with chemotherapy, and with chemoresistance in breast cancer cells in vitro.

conclusionsThis study is the first to define the molecular profile of BCSCs from a range of primary breast cancers. ITGA7 acts as a predictive marker for chemotherapy response, in accordance with its downregulation in BCSCs.

Indexed as

Down-RegulationDrug Resistance, NeoplasmAntigens, CDBiomarkers, TumorBreast NeoplasmsCell Line, TumorCell ProliferationCell SurvivalFemaleGene Expression ProfilingHumansIntegrin alpha ChainsMCF-7 CellsNeoplastic Stem CellsSequence Analysis, RNASurvival AnalysisAntigens, CDBiomarkers, Tumorintegrin alpha7Integrin alpha Chains

Identifiers

PMID34253873
PMCPMC8476506
OpenAlexW3179500035

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.