Evidence map›Paper›PMID 34253723›Full record

ArticleNature communications2021

Structural basis of the membrane intramolecular transacylase reaction responsible for lyso-form lipoprotein synthesis.

Samir Olatunji, Katherine Bowen, Chia-Ying Huang, Dietmar Weichert, Warispreet Singh, Irina G Tikhonova, Eoin M Scanlan, Vincent Olieric, Martin Caffrey

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Identification and characterization of the lipoproteinProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Identification and Characterization of the LipoproteinbioRxiv : the preprint server for biology · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Samir OlatunjiMembrane Structural and Functional Biology Group, School of Medicine and School of Biochemistry and Immunology, Trinity College Dublin, Dublin, Ireland.ORCID 0000-0001-9958-7689
Katherine BowenSchool of Chemistry, Trinity College Dublin, Dublin, Ireland.ORCID 0000-0001-9609-4942
Chia-Ying HuangSwiss Light Source, Paul Scherrer Institute, Villigen, Switzerland.ORCID 0000-0002-7676-0239
Dietmar WeichertMembrane Structural and Functional Biology Group, School of Medicine and School of Biochemistry and Immunology, Trinity College Dublin, Dublin, Ireland.ORCID 0000-0002-0694-7671
Warispreet SinghSchool of Pharmacy, Queen's University Belfast, Belfast, United Kingdom.
Irina G TikhonovaSchool of Pharmacy, Queen's University Belfast, Belfast, United Kingdom.ORCID 0000-0002-6228-9431
Eoin M ScanlanSchool of Chemistry, Trinity College Dublin, Dublin, Ireland.
Vincent OliericSwiss Light Source, Paul Scherrer Institute, Villigen, Switzerland.ORCID 0000-0002-0533-7222
Martin CaffreyMembrane Structural and Functional Biology Group, School of Medicine and School of Biochemistry and Immunology, Trinity College Dublin, Dublin, Ireland. martin.caffrey@tcd.ie.ORCID 0000-0002-2931-4551
Trinity College Dublin · IEPaul Scherrer Institute · CHQueen's University Belfast · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lipoproteins serve diverse functions in the bacterial cell and some are essential for survival. Some lipoproteins are adjuvants eliciting responses from the innate immune system of the host. The growing list of membrane enzymes responsible for lipoprotein synthesis includes the recently discovered lipoprotein intramolecular transacylase, Lit. Lit creates a lipoprotein that is less immunogenic, possibly enabling the bacteria to gain a foothold in the host by stealth. Here, we report the crystal structure of the Lit enzyme from Bacillus cereus and describe its mechanism of action. Lit consists of four transmembrane helices with an extracellular cap. Conserved residues map to the cap-membrane interface. They include two catalytic histidines that function to effect unimolecular transacylation. The reaction involves acyl transfer from the sn-2 position of the glyceryl moiety to the amino group on the N-terminal cysteine of the substrate via an 8-membered ring intermediate. Transacylation takes place in a confined aromatic residue-rich environment that likely evolved to bring distant moieties on the substrate into proximity and proper orientation for catalysis.

Indexed as

AcylationAcyltransferasesAmino Acid SequenceBacterial ProteinsCatalytic DomainCell MembraneConserved SequenceCysteineDNA Mutational AnalysisLipoproteinsProtein Processing, Post-TranslationalStructure-Activity RelationshipSubstrate SpecificityAcyltransferasesBacterial ProteinsCysteineLipoproteins

Identifiers

PMID34253723
PMCPMC8275575
OpenAlexW3181310145

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.