Evidence map›Paper›PMID 34252883›Full record

ArticleAging2021

Methylation silencing CDH23 is a poor prognostic marker in diffuse large B-cell lymphoma.

Baoping Cao, Xiaochuan Guo, Lefu Huang, Bin Wang, Weixia Wang, Dong Han, Weijing Zhang, Kaili Zhong

Open access · hybridAbstract read
In one paragraph

Article in Aging, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Identification of tumor antigens and immune subtypes of acute myeloid leukemia for mRNA vaccine development.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2023
    Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Baoping CaoDepartment of Lymphoma, Beijing Shijitan Hospital, Capital Medical University, Haidian 100038, Beijing, China.
Xiaochuan GuoDepartment of Lymphoma, Beijing Shijitan Hospital, Capital Medical University, Haidian 100038, Beijing, China.
Lefu HuangDepartment of Lymphoma, Beijing Shijitan Hospital, Capital Medical University, Haidian 100038, Beijing, China.
Bin WangDepartment of Lymphoma, Beijing Shijitan Hospital, Capital Medical University, Haidian 100038, Beijing, China.
Weixia WangDepartment of Lymphoma, Beijing Shijitan Hospital, Capital Medical University, Haidian 100038, Beijing, China.
Dong HanDepartment of Lymphoma, Beijing Shijitan Hospital, Capital Medical University, Haidian 100038, Beijing, China.
Weijing ZhangDepartment of Lymphoma, Beijing Shijitan Hospital, Capital Medical University, Haidian 100038, Beijing, China.
Kaili ZhongDepartment of Lymphoma, Beijing Shijitan Hospital, Capital Medical University, Haidian 100038, Beijing, China.
Capital Medical University · CNBeijing Shijitan Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cadherin-23(CDH23) mediates homotypic and heterotypic cell-cell adhesions in cancer cells. However, the epigenetic regulation, the biological functions, the mechanisms and the prognostic value of CDH23 in diffuse large B-cell lymphoma (DLBCL) are still unclear. The Gene Expression Profiling Interactive Analysis (GEPIA) and the Gene Expression Omnibus (GEO) database were employed to analyze the CDH23 expression level in DLBCL. The correlation of CDH23 expression and methylation was analyzed by LinkedOmics database. The prognostic value was analyzed via GEPIA. Correlated genes, target kinase, target miRNA, target transcription factor and biological functions were identified by LinkedOmics and GeneMANIA database. The relationship between CDH23 and the immune cell infiltration was explored by the Tumor Immune Estimation Resource (TIMER). The expression of CDH23 was reduced by DNA methylation significantly in DLBCL tissue. Reduction of CDH23 represented poor outcome of DLBCL patients. Functional enrichment analysis showed that CDH23 mainly enriched in cancer cell growth, cell metastasis, cell adhesion, cell cycle, drug catabolic process, leukocyte mediated immunity and DNA repair by some cancer related kinases, miRNAs and transcription factors. These results indicated that methylated reduction of CDH23 represented poor outcome of DLBCL. CDH23 is associated with essential biological functions and key molecules in DLBCL. CDH23 may play crucial roles in DLBCL tumorigenesis. Our results lay a foundation for further investigation of the role of CDH23 in DLBCL tumorigenesis.

Indexed as

Gene SilencingBiomarkers, TumorCadherin Related ProteinsCadherinsComputational BiologyDatabases, GeneticDisease-Free SurvivalDNA MethylationGene Expression ProfilingGenomicsHumansLymphoma, Large B-Cell, DiffusePrognosisSurvival AnalysisBiomarkers, TumorCadherin Related ProteinsCadherinsCDH23 protein, humancadherin-23CDK1CDK2diffuse large B-cell lymphomaDNA methylation

Identifiers

PMID34252883
PMCPMC8312441
OpenAlexW3180034906

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.