Evidence map›Paper›PMID 34252168›Full record

ArticlePLoS pathogens2021

Strategies to target SARS-CoV-2 entry and infection using dual mechanisms of inhibition by acidification inhibitors.

Chaitra Prabhakara, Rashmi Godbole, Parijat Sil, Sowmya Jahnavi, Shah-E-Jahan Gulzar, Thomas S van Zanten, Dhruv Sheth, Neeraja Subhash, Anchal Chandra, Akshatha Shivaraj and 16 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT07254052 (Effectiveness of a Sustained-release Ammonium Chloride Formulation in Reducing the Viral Load of Patients With COVID-19 or Influenza), which is not on this map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
6.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT07254052 completednot on this mapstarted 2024, after this paper: background citation

Effectiveness of a Sustained-release Ammonium Chloride Formulation in Reducing the Viral Load of Patients With COVID-19 or Influenza

TypeobservationalSponsorNational and Kapodistrian University of AthensRan2024 to 2025Enrolled32ConditionsRNA Virus Infections, Viral Infection COVID-19, Influenza A and B
3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 69 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 4 institutions in 1 country.

Chaitra PrabhakaraNational Centre for Biological Sciences (TIFR), Bengaluru, India.ORCID 0000-0003-0915-4017
Rashmi GodboleNational Centre for Biological Sciences (TIFR), Bengaluru, India.
Parijat SilNational Centre for Biological Sciences (TIFR), Bengaluru, India.ORCID 0000-0002-8391-8110
Sowmya JahnaviNational Centre for Biological Sciences (TIFR), Bengaluru, India.ORCID 0000-0002-2923-3938
Shah-E-Jahan GulzarNational Centre for Biological Sciences (TIFR), Bengaluru, India.ORCID 0000-0003-0489-9888
Thomas S van ZantenNational Centre for Biological Sciences (TIFR), Bengaluru, India.ORCID 0000-0002-8810-7149
Dhruv ShethNational Centre for Biological Sciences (TIFR), Bengaluru, India.ORCID 0000-0003-2728-3322
Neeraja SubhashNational Centre for Biological Sciences (TIFR), Bengaluru, India.ORCID 0000-0002-0241-1984
Anchal ChandraNational Centre for Biological Sciences (TIFR), Bengaluru, India.ORCID 0000-0003-4096-4771
Akshatha ShivarajNational Centre for Biological Sciences (TIFR), Bengaluru, India.ORCID 0000-0001-7185-8803
Patricia PanikulamNational Centre for Biological Sciences (TIFR), Bengaluru, India.ORCID 0000-0003-0647-0030
Ibrahim UNational Centre for Biological Sciences (TIFR), Bengaluru, India.ORCID 0000-0003-1374-8969
Vijay Kumar NuthakkiCSIR-Indian Institute of Integrative Medicine, Jammu, India.ORCID 0000-0002-7454-1948
Theja Parassini PuthiyapurayilInstitute for Stem Cell Science and Regenerative Medicine (inSTEM), Bengaluru, India.
Riyaz AhmedCSIR-Indian Institute of Integrative Medicine, Jammu, India.
Ashaq Hussain NajarCSIR-Indian Institute of Integrative Medicine, Jammu, India.
Sai Manoz LingamalluInstitute for Stem Cell Science and Regenerative Medicine (inSTEM), Bengaluru, India.ORCID 0000-0002-0555-7727
Snigdhadev DasNational Centre for Biological Sciences (TIFR), Bengaluru, India.ORCID 0000-0003-0604-6862
Bhagyashri MahajanNational Centre for Biological Sciences (TIFR), Bengaluru, India.
Praveen VemulaInstitute for Stem Cell Science and Regenerative Medicine (inSTEM), Bengaluru, India.
Sandip B BharateCSIR-Indian Institute of Integrative Medicine, Jammu, India.ORCID 0000-0001-6081-5787
Parvinder Pal SinghCSIR-Indian Institute of Integrative Medicine, Jammu, India.
Ram VishwakarmaCSIR-Indian Institute of Integrative Medicine, Jammu, India.ORCID 0000-0002-0752-6238
Arjun GuhaInstitute for Stem Cell Science and Regenerative Medicine (inSTEM), Bengaluru, India.
Varadharajan SundaramurthyNational Centre for Biological Sciences (TIFR), Bengaluru, India.ORCID 0000-0003-2562-8518
Satyajit MayorNational Centre for Biological Sciences (TIFR), Bengaluru, India.ORCID 0000-0001-9842-6963
National Centre for Biological Sciences · INIndian Institute of Integrative Medicine · INInstitute for Stem Cell Biology and Regenerative Medicine · INManipal Academy of Higher Education · IN

Funding

DBT-Wellcome Trust India Alliance IA/M/15/1/502018DBT-Wellcome Trust India Alliance IA/M/15/502018
6 · The paper itself

Abstract

Many viruses utilize the host endo-lysosomal network for infection. Tracing the endocytic itinerary of SARS-CoV-2 can provide insights into viral trafficking and aid in designing new therapeutic strategies. Here, we demonstrate that the receptor binding domain (RBD) of SARS-CoV-2 spike protein is internalized via the pH-dependent CLIC/GEEC (CG) endocytic pathway in human gastric-adenocarcinoma (AGS) cells expressing undetectable levels of ACE2. Ectopic expression of ACE2 (AGS-ACE2) results in RBD traffic via both CG and clathrin-mediated endocytosis. Endosomal acidification inhibitors like BafilomycinA1 and NH4Cl, which inhibit the CG pathway, reduce the uptake of RBD and impede Spike-pseudoviral infection in both AGS and AGS-ACE2 cells. The inhibition by BafilomycinA1 was found to be distinct from Chloroquine which neither affects RBD uptake nor alters endosomal pH, yet attenuates Spike-pseudovirus entry. By screening a subset of FDA-approved inhibitors for functionality similar to BafilomycinA1, we identified Niclosamide as a SARS-CoV-2 entry inhibitor. Further validation using a clinical isolate of SARS-CoV-2 in AGS-ACE2 and Vero cells confirmed its antiviral effect. We propose that Niclosamide, and other drugs which neutralize endosomal pH as well as inhibit the endocytic uptake, could provide broader applicability in subverting infection of viruses entering host cells via a pH-dependent endocytic pathway.

Indexed as

COVID-19 Drug TreatmentAmmonium ChlorideAngiotensin-Converting Enzyme 2AnimalsAntiviral AgentsCell LineChlorocebus aethiopsChloroquineClathrinCOVID-19Drug SynergismEndocytosisEndosomesHumansHydrogen-Ion ConcentrationHydroxychloroquineACE2 protein, humanAmmonium ChlorideAngiotensin-Converting Enzyme 2Antiviral Agentsbafilomycin A1ChloroquineClathrinHydroxychloroquineMacrolidesNiclosamideSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID34252168
PMCPMC8297935
OpenAlexW3177630631

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.