Evidence map›Paper›PMID 34251885›Full record

ArticleMolecular and cellular biology2021

The Herpes Simplex Virus 1 Protein ICP4 Acts as both an Activator and a Repressor of Host Genome Transcription during Infection.

Thomas Rivas, James A Goodrich, Jennifer F Kugel

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 22 citations in OpenAlex.

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  19. tRNAs at the Virus-Host Interface.Wiley interdisciplinary reviews. RNA
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Thomas RivasDepartment of Biochemistry, University of Colorado-Boulder, Boulder, Colorado, USA.ORCID 0000-0002-0631-0515
James A GoodrichDepartment of Biochemistry, University of Colorado-Boulder, Boulder, Colorado, USA.
Jennifer F KugelDepartment of Biochemistry, University of Colorado-Boulder, Boulder, Colorado, USA.ORCID 0000-0003-1086-290X
University of Colorado Boulder · US

Funding

TRAINING IN SIGNAL TRANSDUCTION &CELL CYCLE REGULATIONT32GM008759 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI AHN, NATALIE G. · 2000 to 2020
$5.9M
Regulation of RNA polymerase ll by small RNAsR01GM068414 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI GOODRICH, JAMES · 2003 to 2018
$5.1M
FACSAria Fusion Cell SorterS10OD021601 · OD · UNIVERSITY OF COLORADO · PI LIU, XUEDONG · 2016 to 2016
$599k
How cell stress and 3' end alterations control the metabolism of a cellular non-coding RNAF31GM125366 · NIGMS · UNIVERSITY OF COLORADO · PI RIVAS, THOMAS · 2018 to 2020
$102k
NIGMS NIH HHS F31 GM125366NIGMS NIH HHS R01 GM068414NIGMS NIH HHS T32 GM008759NIH HHS S10 OD021601
6 · The paper itself

Abstract

Infection by herpes simplex virus 1 (HSV-1) impacts nearly all steps of host cell gene expression. The regulatory mechanisms by which this occurs, and the interplay between host and viral factors, have yet to be fully elucidated. We investigated how the occupancy of RNA polymerase II (Pol II) on the host genome changes during HSV-1 infection and is impacted by the viral immediate early protein ICP4. Pol II ChIP-seq experiments revealed ICP4-dependent decreases and increases in Pol II levels across the bodies of hundreds of genes. Our data suggest ICP4 represses host transcription by inhibiting recruitment of Pol II and activates host genes by promoting release of Pol II from promoter proximal pausing into productive elongation. Consistent with this, ICP4 was required for the decrease in levels of the pausing factor NELF-A on several HSV-1-activated genes after infection. In the absence of infection, exogenous expression of ICP4 activated, but did not repress, transcription of some genes in a chromatin-dependent context. Our data support the model that ICP4 decreases promoter proximal pausing on host genes activated by infection and that ICP4 is necessary, but not sufficient, to repress transcription of host genes during viral infection.

Indexed as

HEK293 CellsHerpes SimplexHerpesvirus 1, HumanHumansImmediate-Early ProteinsPromoter Regions, GeneticRNA Polymerase IITranscription, Geneticherpes simplex virus, type 1 protein ICP4Immediate-Early ProteinsRNA Polymerase IIChIP-seqHSV-1RNA polymerase IItranscriptionviral infection

Identifiers

PMID34251885
PMCPMC8462455
OpenAlexW3179090074

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.