Evidence map›Paper›PMID 34245607›Full record

ArticleJournal of clinical laboratory analysis2021

Multilocus sequence typing analysis and second-generation sequencing analysis of Salmonella Wandsworth.

Chunling Zhang, Yichao Wang, Yutian Lu, Xuebin Xu

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical laboratory analysis, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. An Epidemiological Study onAnimals : an open access journal from MDPI · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Chunling ZhangDepartment of Clinical Laboratory, Taizhou Central Hospital (Taizhou University Hospital), Taizhou, China.ORCID https://orcid.org/0000-0001-8607-9669
Yichao WangDepartment of Clinical Laboratory, Taizhou Central Hospital (Taizhou University Hospital), Taizhou, China.
Yutian LuDepartment of Clinical Laboratory, Taizhou Central Hospital (Taizhou University Hospital), Taizhou, China.
Xuebin XuShanghai Municipal Center for Disease Control and Prevention, Shanghai, China.
Taizhou Central Hospital · CNShanghai Municipal Center For Disease Control Prevention · CN

Funding

Zhejiang Medical and Health Science and Technology Program 2019KY788
6 · The paper itself

Abstract

backgroundSalmonella Wandsworth is a rare serotype of Salmonella. This study analyzed the genotyping, genome structure, and molecular biological functions of Salmonella Wandsworth based on the results of multilocus sequence typing and next-generation sequencing genome assembly analysis.

methodsSerological typing was performed using the slide-agglutination method. The micro broth dilution method was used to test antibiotic susceptibility. Multilocus sequence typing (MLST) was used to perform the homology analysis, while the second-generation sequencing genome analysis was used to analyze the whole genome of the bacteria.

resultsSalmonella Wandsworth is Group Q Salmonella. The MLST of this strain was ST1498. Salmonella Wandsworth was sensitive to antibiotics, such as ceftriaxone, imipenem, chloramphenicol, and colistin, but was resistant to ampicillin, cefalotin, gentamicin, and ciprofloxacin. The second-generation sequencing results showed that the genome sequence length of the bacteria was 5109457bp. Annotated COG library analysis generated 3,746 corresponding genes. After the comparison with the KEGG library, 1,340 genes, which participate in 19 types of metabolic pathways, were obtained. A total of 249 pathogenic factors and 2 disease islands were predicted. 2 CRISPR sites and 8 Cas sites were predicted. It can be seen from the evolutionary tree that Salmonella Wandsworth MLST1498 and Paratyphi B str.SPB7 are gathered together. We identified one resistance gene, namely, aac(6')-Iaa accounting for aminoglycoside resistance.

conclusionSalmonella Wandsworth isolated in this study is Salmonella group Q. Consequently, it is necessary to strengthen the understanding of clinical infections of Salmonella Wandsworth and carry out continuous monitoring and research.

Indexed as

Bacterial ProteinsBacterial Typing TechniquesDNA, BacterialGenome, BacterialHigh-Throughput Nucleotide SequencingHumansMultilocus Sequence TypingSalmonellaSalmonella InfectionsBacterial ProteinsDNA, Bacterialantibiotic resistanceMultilocus sequence typing (MLST)next-generation sequencingSalmonella Wandsworthserotype

Identifiers

PMID34245607
PMCPMC8418494
OpenAlexW3177722207

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.