Evidence map›Paper›PMID 34245241›Full record

ArticleBriefings in bioinformatics2021

Published anti-SARS-CoV-2 in vitro hits share common mechanisms of action that synergize with antivirals.

Jing Xing, Shreya Paithankar, Ke Liu, Katie Uhl, Xiaopeng Li, Meehyun Ko, Seungtaek Kim, Jeremy Haskins, Bin Chen

Open access · bronzeAbstract read
In one paragraph

Article in Briefings in bioinformatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Jing XingDepartment of Pediatrics and Human Development, Michigan State University, Grand Rapids, Michigan, USA.ORCID 0000-0003-4726-8525
Shreya PaithankarDepartment of Pediatrics and Human Development, Michigan State University, Grand Rapids, Michigan, USA.
Ke LiuDepartment of Pediatrics and Human Development, Michigan State University, Grand Rapids, Michigan, USA.ORCID 0000-0003-3190-1656
Katie UhlDepartment of Pediatrics and Human Development, Michigan State University, Grand Rapids, Michigan, USA.
Xiaopeng LiDepartment of Pediatrics and Human Development, Michigan State University, Grand Rapids, Michigan, USA.
Meehyun KoZoonotic Virus Laboratory, Institut Pasteur Korea, Seongnam, South Korea.
Seungtaek KimZoonotic Virus Laboratory, Institut Pasteur Korea, Seongnam, South Korea.
Jeremy HaskinsDepartment of Pediatrics and Human Development, Michigan State University, Grand Rapids, Michigan, USA.
Bin ChenDepartment of Pediatrics and Human Development, Michigan State University, Grand Rapids, Michigan, USA.
Grand Rapids Community College · USInstitut Pasteur Korea · KR

Funding

Repurpose open data to discover therapeutics for understudied diseasesR01GM134307 · NIGMS · MICHIGAN STATE UNIVERSITY · PI CHEN, BIN · 2019 to 2023
$2.5M
Integrating transcriptomic, proteomic and pharmacogenomic data to inform individualized therapy in cancersK01ES028047 · NIEHS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHEN, BIN · 2017 to 2020
$682k
National Culture Collection for Pathogens NCCP43326National Science Foundation 2028717NIEHS NIH HHS K01 ES028047NIGMS NIH HHS R01 GM134307NIH HHS R01GM134307
6 · The paper itself

Abstract

The global efforts in the past year have led to the discovery of nearly 200 drug repurposing candidates for COVID-19. Gaining more insights into their mechanisms of action could facilitate a better understanding of infection and the development of therapeutics. Leveraging large-scale drug-induced gene expression profiles, we found 36% of the active compounds regulate genes related to cholesterol homeostasis and microtubule cytoskeleton organization. Following bioinformatics analyses revealed that the expression of these genes is associated with COVID-19 patient severity and has predictive power on anti-SARS-CoV-2 efficacy in vitro. Monensin, a top new compound that regulates these genes, was further confirmed as an inhibitor of SARS-CoV-2 replication in Vero-E6 cells. Interestingly, drugs co-targeting cholesterol homeostasis and microtubule cytoskeleton organization processes more likely present a synergistic effect with antivirals. Therefore, potential therapeutics could be centered around combinations of targeting these processes and viral proteins.

Indexed as

drug combinationdrug mechanismsSARS-CoV-2transcriptomics

Identifiers

PMID34245241
PMCPMC8344595
OpenAlexW3181462488

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.