Evidence map›Paper›PMID 34244905›Full record

ArticleJournal of computer-aided molecular design2021

Prediction of n-octanol/water partition coefficients and acidity constants (pK

Antonio Viayna, Silvana Pinheiro, Carles Curutchet, F Javier Luque, William J Zamora

Abstract read
In one paragraph

Article in Journal of computer-aided molecular design, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Calculating the Aqueous pKAntioxidants (Basel, Switzerland) · 2023
    Article
  5. Evaluation of log P, pKJournal of computer-aided molecular design · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Antonio ViaynaDepartment of Nutrition, Food Sciences and Gastronomy, Faculty of Pharmacy and Food Sciences, Institute of Biomedicine (IBUB), and Institute of Theoretical and Computational Chemistry (IQTC-UB), University of Barcelona (UB), Avda. Prat de La Riba, 171, 08921, Santa Coloma de Gramenet, Spain. toniviayna@ub.edu.ORCID http://orcid.org/0000-0002-2112-5828
Silvana PinheiroInstitute of Exact and Natural Sciences, Federal University of Pará, Belém, Pará, 66075-110, Brazil.ORCID http://orcid.org/0000-0002-6909-1129
Carles CurutchetDepartment of Pharmacy and Pharmaceutical Technology and Physical Chemistry, Faculty of Pharmacy and Food Sciences, and Institute of Theoretical and Computational Chemistry (IQTC-UB), University of Barcelona, Av. de Joan XXIII, 27-31, 08028, Barcelona, Spain.ORCID http://orcid.org/0000-0002-0070-1208
F Javier LuqueDepartment of Nutrition, Food Sciences and Gastronomy, Faculty of Pharmacy and Food Sciences, Institute of Biomedicine (IBUB), and Institute of Theoretical and Computational Chemistry (IQTC-UB), University of Barcelona (UB), Avda. Prat de La Riba, 171, 08921, Santa Coloma de Gramenet, Spain.ORCID http://orcid.org/0000-0002-8049-3567
William J ZamoraSchool of Chemistry and Faculty of Pharmacy, University of Costa Rica, San Pedro, San José, Costa Rica.ORCID http://orcid.org/0000-0003-4029-4528

Funding

Advancing predictive physical modeling through focused development of model systems to drive new modeling innovationsR01GM124270 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI MOBLEY, DAVID LOWELL · 2018 to 2021
$1.5M
NIGMS NIH HHS R01 GM124270
6 · The paper itself

Abstract

Within the scope of SAMPL7 challenge for predicting physical properties, the Integral Equation Formalism of the Miertus-Scrocco-Tomasi (IEFPCM/MST) continuum solvation model has been used for the blind prediction of n-octanol/water partition coefficients and acidity constants of a set of 22 and 20 sulfonamide-containing compounds, respectively. The log P and pK

Indexed as

Computational BiologyComputer SimulationDipeptidesHumansLigandsModels, StatisticalOctanolsQuantum TheorySoftwareSolubilitySulfonamidesThermodynamicsWatercompound 20DipeptidesLigandsOctanolsSulfonamidesWaterConformational studyContinuum solvation modelsMST modelPhysical propertiespK aSAMPL7Solvation free energyWater-octanol log P

Identifiers

PMID34244905
PMCPMC8295120

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.