Evidence map›Paper›PMID 34244557›Full record

ArticleScientific reports2021

In silico designing of vaccine candidate against Clostridium difficile.

Srijita Basak, Debashrito Deb, Utkarsh Narsaria, Tamalika Kar, Filippo Castiglione, Indraneel Sanyal, Pratap D Bade, Anurag P Srivastava

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. AgainstToxins · 2025
    Review
  7. Article
  8. Article
  9. Development of multi-epitope mRNA vaccine againstSynthetic and systems biotechnology · 2024
    Article
  10. Article
  11. Immunization Strategies Against Clostridioides difficile.Advances in experimental medicine and biology · 2024
    Review
  12. Review
  13. Non-Toxin-BasedPathogens (Basel, Switzerland) · 2023
    Article
  14. Frontiers in genetics · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Srijita Basak *Biopharmaceutical Development Department, Syngene International Limited, Bangalore, India.
Debashrito Deb *Biopharmaceutical Development Department, Syngene International Limited, Bangalore, India.
Utkarsh Narsaria *Biopharmaceutical Development Department, Syngene International Limited, Bangalore, India.
Tamalika Kar *Biopharmaceutical Development Department, Syngene International Limited, Bangalore, India.
Filippo CastiglioneInstitute for Applied Computing (IAC), National Research Council of Italy, Rome, Italy.
Indraneel SanyalBiopharmaceutical Development Department, Syngene International Limited, Bangalore, India.
Pratap D BadeBiopharmaceutical Development Department, Syngene International Limited, Bangalore, India. Pratap.Bade@syngeneintl.com.
Anurag P SrivastavaBiopharmaceutical Development Department, Syngene International Limited, Bangalore, India. Anurag.Srivastava@syngeneintl.com.ORCID 0000-0003-3493-1375
Syngene International (India) · INNational Research Council · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Clostridium difficile is a spore-forming gram-positive bacterium, recognized as the primary cause of antibiotic-associated nosocomial diarrhoea. Clostridium difficile infection (CDI) has emerged as a major health-associated infection with increased incidence and hospitalization over the years with high mortality rates. Contamination and infection occur after ingestion of vegetative spores, which germinate in the gastro-intestinal tract. The surface layer protein and flagellar proteins are responsible for the bacterial colonization while the spore coat protein, is associated with spore colonization. Both these factors are the main concern of the recurrence of CDI in hospitalized patients. In this study, the CotE, SlpA and FliC proteins are chosen to form a multivalent, multi-epitopic, chimeric vaccine candidate using the immunoinformatics approach. The overall reliability of the candidate vaccine was validated in silico and the molecular dynamics simulation verified the stability of the vaccine designed. Docking studies showed stable vaccine interactions with Toll-Like Receptors of innate immune cells and MHC receptors. In silico codon optimization of the vaccine and its insertion in the cloning vector indicates a competent expression of the modelled vaccine in E. coli expression system. An in silico immune simulation system evaluated the effectiveness of the candidate vaccine to trigger a protective immune response.

Indexed as

Bacterial VaccinesClostridioides difficileClostridium InfectionsComputational BiologyEscherichia coliHumansBacterial Vaccines

Identifiers

PMID34244557
PMCPMC8271013
OpenAlexW3182222934

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.