Evidence map›Paper›PMID 34244431›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Quantification and demonstration of the collective constriction-by-ratchet mechanism in the dynamin molecular motor.

Oleg M Ganichkin, Renee Vancraenenbroeck, Gabriel Rosenblum, Hagen Hofmann, Alexander S Mikhailov, Oliver Daumke, Jeffrey K Noel

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Expanding the phenotypic spectrum of DNM1-related disorders: novel GTPase domain variants and their diverse neurological outcomes.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2025
    Article
  4. Making the cut: Multiscale simulation of membrane remodeling.Current opinion in structural biology · 2024
    Review
  5. Article
  6. Article
  7. Review
  8. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Oleg M GanichkinCrystallography, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, 13125 Berlin, Germany.
Renee VancraenenbroeckDepartment of Chemical and Structural Biology, Weizmann Institute of Science, 76100 Rehovot, Israel.ORCID 0000-0003-2685-2749
Gabriel RosenblumDepartment of Chemical and Structural Biology, Weizmann Institute of Science, 76100 Rehovot, Israel.
Hagen HofmannDepartment of Chemical and Structural Biology, Weizmann Institute of Science, 76100 Rehovot, Israel.ORCID 0000-0003-1669-3158
Alexander S MikhailovDepartment of Physical Chemistry, Fritz Haber Institute of the Max Planck Society, 14195 Berlin, Germany.ORCID 0000-0002-2416-8401
Oliver DaumkeCrystallography, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, 13125 Berlin, Germany; jeffrey.noel@mdc-berlin.de oliver.daumke@mdc-berlin.de.
Jeffrey K NoelCrystallography, Max Delbrück Center for Molecular Medicine in the Helmholtz Association, 13125 Berlin, Germany; jeffrey.noel@mdc-berlin.de oliver.daumke@mdc-berlin.de.ORCID 0000-0003-3168-6036
Max Delbrück Center · DEWeizmann Institute of Science · ILKanazawa University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dynamin oligomerizes into helical filaments on tubular membrane templates and, through constriction, cleaves them in a GTPase-driven way. Structural observations of GTP-dependent cross-bridges between neighboring filament turns have led to the suggestion that dynamin operates as a molecular ratchet motor. However, the proof of such mechanism remains absent. Particularly, it is not known whether a powerful enough stroke is produced and how the motor modules would cooperate in the constriction process. Here, we characterized the dynamin motor modules by single-molecule Förster resonance energy transfer (smFRET) and found strong nucleotide-dependent conformational preferences. Integrating smFRET with molecular dynamics simulations allowed us to estimate the forces generated in a power stroke. Subsequently, the quantitative force data and the measured kinetics of the GTPase cycle were incorporated into a model including both a dynamin filament, with explicit motor cross-bridges, and a realistic deformable membrane template. In our simulations, collective constriction of the membrane by dynamin motor modules, based on the ratchet mechanism, is directly reproduced and analyzed. Functional parallels between the dynamin system and actomyosin in the muscle are seen. Through concerted action of the motors, tight membrane constriction to the hemifission radius can be reached. Our experimental and computational study provides an example of how collective motor action in megadalton molecular assemblies can be approached and explicitly resolved.

Indexed as

Models, BiologicalBiomechanical PhenomenaDynaminsFluorescence Resonance Energy TransferKineticsMolecular Motor ProteinsNucleotidesProtein DomainsProtein MultimerizationSolutionsDynaminsMolecular Motor ProteinsNucleotidesSolutionsbiomembranesCanham–Helfrichelastic filamentendocytosistorque

Identifiers

PMID34244431
PMCPMC8285958
OpenAlexW3181531837

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.