Evidence map›Paper›PMID 34244407›Full record

ArticleScience (New York, N.Y.)2021

Gut microbiome heritability is nearly universal but environmentally contingent.

Laura Grieneisen, Mauna Dasari, Trevor J Gould, Johannes R Björk, Jean-Christophe Grenier, Vania Yotova, David Jansen, Neil Gottel, Jacob B Gordon, Niki H Learn and 11 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 138 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
138citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

138 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. NovelGut · 2026
    Article
  9. Article
  10. The island biology of the host microbiome.Trends in microbiology · 2026
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
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  18. Article
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  20. Article

78 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors.

Laura GrieneisenDepartment of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN 55455, USA. lgrienei@umn.edu blekhman@umn.edu earchie@nd.edu jenny.tung@duke.edu.ORCID 0000-0001-7286-5001
Mauna DasariDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA.ORCID 0000-0002-1956-2500
Trevor J GouldDepartment of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN 55455, USA.
Johannes R BjörkDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA.ORCID 0000-0001-9768-1946
Jean-Christophe GrenierDepartment of Genetics, CHU Sainte Justine Research Center, Montréal, Quebec H3T 1C5, Canada.ORCID 0000-0001-7937-5160
Vania YotovaDepartment of Genetics, CHU Sainte Justine Research Center, Montréal, Quebec H3T 1C5, Canada.ORCID 0000-0002-6730-2404
David JansenDepartment of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA.ORCID 0000-0001-5857-0581
Neil GottelMarine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92093.ORCID 0000-0002-6568-5675
Jacob B GordonDepartment of Biology, Duke University, Durham, NC 27708, USA.ORCID 0000-0001-6963-4405
Niki H LearnDepartment of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA.
Laurence R GesquiereDepartment of Biology, Duke University, Durham, NC 27708, USA.ORCID 0000-0001-7721-526X
Tim L WangoAmboseli Baboon Research Project, Amboseli National Park, Kenya.
Raphael S MututuaAmboseli Baboon Research Project, Amboseli National Park, Kenya.
J Kinyua WarutereAmboseli Baboon Research Project, Amboseli National Park, Kenya.
Long'ida SiodiAmboseli Baboon Research Project, Amboseli National Park, Kenya.
Jack A GilbertMarine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92093.ORCID 0000-0001-7920-7001
Luis B BarreiroDepartment of Genetics, CHU Sainte Justine Research Center, Montréal, Quebec H3T 1C5, Canada.
Susan C AlbertsDepartment of Biology, Duke University, Durham, NC 27708, USA.ORCID 0000-0002-1313-488X
Jenny Tung *Department of Biology, Duke University, Durham, NC 27708, USA. lgrienei@umn.edu blekhman@umn.edu earchie@nd.edu jenny.tung@duke.edu.ORCID 0000-0003-0416-2958
Elizabeth A Archie *Department of Biological Sciences, University of Notre Dame, Notre Dame, IN 46556, USA. lgrienei@umn.edu blekhman@umn.edu earchie@nd.edu jenny.tung@duke.edu.ORCID 0000-0002-1187-0998
Ran Blekhman *Department of Genetics, Cell Biology, and Development, University of Minnesota, Minneapolis, MN 55455, USA. lgrienei@umn.edu blekhman@umn.edu earchie@nd.edu jenny.tung@duke.edu.ORCID 0000-0003-3218-613X

Funding

THE RANGE OF MALE-FEMALE MORTALITY DIFFERENCESP01AG031719 · NIA · DUKE UNIVERSITY · PI ZENG, YI · 2009 to 2020
$10.2M
Program Development CoreP30AG024361 · NIA · PRINCETON UNIVERSITY · PI PAXSON, CHRISTINA · 2004 to 2013
$5.9M
Science CoreP2CHD065563 · NICHD · DUKE UNIVERSITY · PI James Moody · 2015 to 2026
$5.7M
Population Genomics of Host-Microbiome InteractionsR35GM128716 · NIGMS · UNIVERSITY OF MINNESOTA · PI Ran Blekhman · 2018 to 2026
$3.5M
A life course perspective on gut microbiome aging and health in a non-human primate modelR01AG071684 · NIA · UNIVERSITY OF NOTRE DAME · PI ARCHIE, ELIZABETH · 2021 to 2025
$3.2M
A life course perspective on the effects of cumulative early adversity on healthR01AG053330 · NIA · UNIVERSITY OF NOTRE DAME · PI Elizabeth Archie · 2017 to 2026
$3.0M
Early adversity and DNA methylation in a primate model of stress and development.R01HD088558 · NICHD · DUKE UNIVERSITY · PI TUNG, JENNY · 2017 to 2021
$2.0M
Mechanisms and Consequences of Social Connectedness in a Wild Primate PopulationR01AG034513 · NIA · DUKE UNIVERSITY · PI ALBERTS, SUSAN C. · 2009 to 2013
$1.8M
Duke Population Research InstituteR24HD065563 · NICHD · DUKE UNIVERSITY · PI SANDERS, SETH G · 2010 to 2014
$1.4M
A prospective, longitudinal perspective on gut microbiome aging and health in a non-human primate modelR21AG055777 · NIA · UNIVERSITY OF NOTRE DAME · PI ARCHIE, ELIZABETH · 2017 to 2018
$438k
Epigenetic Consequences of Social Status across the Life Span in a Primate ModelR21AG049936 · NIA · DUKE UNIVERSITY · PI ALBERTS, SUSAN C., TUNG, JENNY · 2014 to 2015
$319k
Novel Integration of Multidimensional Data from an Emerging Model of AgingR03AG045459 · NIA · DUKE UNIVERSITY · PI ALBERTS, SUSAN C., TUNG, JENNY · 2013 to 2013
$79k
NIA NIH HHS P01 AG031719NIA NIH HHS P30 AG024361NIA NIH HHS R01 AG034513NIA NIH HHS R01 AG053330NIA NIH HHS R01 AG071684NIA NIH HHS R03 AG045459NIA NIH HHS R21 AG049936NIA NIH HHS R21 AG055777NICHD NIH HHS P2C HD065563NICHD NIH HHS R01 HD088558NICHD NIH HHS R24 HD065563NIGMS NIH HHS R35 GM128716
6 · The paper itself

Abstract

Relatives have more similar gut microbiomes than nonrelatives, but the degree to which this similarity results from shared genotypes versus shared environments has been controversial. Here, we leveraged 16,234 gut microbiome profiles, collected over 14 years from 585 wild baboons, to reveal that host genetic effects on the gut microbiome are nearly universal. Controlling for diet, age, and socioecological variation, 97% of microbiome phenotypes were significantly heritable, including several reported as heritable in humans. Heritability was typically low (mean = 0.068) but was systematically greater in the dry season, with low diet diversity, and in older hosts. We show that longitudinal profiles and large sample sizes are crucial to quantifying microbiome heritability, and indicate scope for selection on microbiome characteristics as a host phenotype.

Indexed as

EnvironmentActinobacteriaAgingAnimalsBacillotaBacteriaBacteroidetesDietFecesFemaleGastrointestinal MicrobiomeGenotypeHumansMalePapioPhenotype

Identifiers

PMID34244407
PMCPMC8377764

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.