Evidence map›Paper›PMID 34242503›Full record

ArticleJournal of chemical information and modeling2021

Mapping the Molecular Architecture Required for Lipid-Binding Pockets Using a Subset of Established and Orphan G-Protein Coupled Receptors.

Shanthi Nagarajan, Zu Yuan Qian, Parthiban Marimuthu, Nabil J Alkayed, Sanjiv Kaul, Anthony P Barnes

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Shanthi NagarajanThe Knight Cardiovascular Institute, Oregon Health Science University Portland, Portland, Oregon 97239, United States.ORCID 0000-0002-7548-0083
Zu Yuan QianThe Knight Cardiovascular Institute, Oregon Health Science University Portland, Portland, Oregon 97239, United States.
Parthiban MarimuthuPharmaceutical Science Laboratory and Structural Bioinformatics Laboratory, Faculty of Science and Engineering, Åbo Akademi University, FI-20520 Turku, Finland.
Nabil J AlkayedThe Knight Cardiovascular Institute, Oregon Health Science University Portland, Portland, Oregon 97239, United States.
Sanjiv KaulThe Knight Cardiovascular Institute, Oregon Health Science University Portland, Portland, Oregon 97239, United States.
Anthony P BarnesThe Knight Cardiovascular Institute, Oregon Health Science University Portland, Portland, Oregon 97239, United States.ORCID 0000-0002-4598-9591

Funding

Neuroinflammatory Mechanisms of Vascular Cognitive ImpairmentRF1AG058273 · NIA · OREGON HEALTH & SCIENCE UNIVERSITY · PI ALKAYED, NABIL J · 2017 to 2023
$4.2M
Endothelial-Pericyte Crosstalk in Diabetic StrokeR01NS108501 · NINDS · OREGON HEALTH & SCIENCE UNIVERSITY · PI ALKAYED, NABIL J · 2018 to 2022
$2.3M
NIA NIH HHS RF1 AG058273NINDS NIH HHS R01 NS108501
6 · The paper itself

Abstract

G-protein coupled receptors (GPCRs) sense a wide variety of stimuli, including lipids, and transduce signals to the intracellular environment to exert various physiological responses. However, the structural features of GPCRs responsible for detecting and triggering responses to distinct lipid ligands have only recently begun to be revealed. 14,15-epoxyeicosatrienoic acid (14,15-EET) is one such lipid mediator that plays an essential role in the vascular system, displaying both vasodilatory and anti-inflammatory properties. We recently reported multiple low-affinity 14,15-EET-binding GPCRs, but the mechanism by which these receptors sense 14,15-EET remains unclear. Here, we have taken a combined computational and experimental approach to identify and confirm critical residues and properties within the lipid-binding pocket. Furthermore, we generated mutants to engineer selected GPCR-predicted binding sites to either confer or abolish 14,15-EET-induced signaling. Our structure-function analyses indicate that hydrophobic and positively charged residues of the receptor-binding pocket are prerequisites for recognizing lipid ligands such as 14,15-EET and possibly other eicosanoids.

Indexed as

LipidsReceptors, G-Protein-Coupled8,11,14-Eicosatrienoic AcidBinding SitesHumansLigandsProtein Binding14,15-epoxy-5,8,11-eicosatrienoic acid8,11,14-Eicosatrienoic AcidLigandsLipidsReceptors, G-Protein-Coupled

Identifiers

PMID34242503
PMCPMC8630984

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.