Evidence map›Paper›PMID 34241965›Full record

ArticleMolecular oral microbiology2021

Identification and characterization of a UbK family kinase in Porphyromonas gingivalis that phosphorylates the RprY response regulator.

John D Perpich, Lan Yakoumatos, Parker Johns, Kendall S Stocke, Zackary R Fitzsimonds, Daniel W Wilkey, Michael L Merchant, Daniel P Miller, Richard J Lamont

Open access · greenAbstract read
In one paragraph

Article in Molecular oral microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
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  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

John D PerpichDepartment of Oral Immunology and Infectious Diseases, University of Louisville, Louisville, Kentucky, USA.
Lan YakoumatosDepartment of Oral Immunology and Infectious Diseases, University of Louisville, Louisville, Kentucky, USA.
Parker JohnsDepartment of Oral Immunology and Infectious Diseases, University of Louisville, Louisville, Kentucky, USA.ORCID 0000-0002-2038-1053
Kendall S StockeDepartment of Oral Immunology and Infectious Diseases, University of Louisville, Louisville, Kentucky, USA.
Zackary R FitzsimondsDepartment of Oral Immunology and Infectious Diseases, University of Louisville, Louisville, Kentucky, USA.
Daniel W WilkeyDivision of Nephrology and Hypertension, Department of Medicine, University of Louisville, Louisville, Kentucky, USA.
Michael L MerchantDivision of Nephrology and Hypertension, Department of Medicine, University of Louisville, Louisville, Kentucky, USA.
Daniel P MillerDepartment of Oral Immunology and Infectious Diseases, University of Louisville, Louisville, Kentucky, USA.
Richard J LamontDepartment of Oral Immunology and Infectious Diseases, University of Louisville, Louisville, Kentucky, USA.ORCID 0000-0002-3147-5039
University of Louisville · US

Funding

Understanding the Host-Microbiome-Therapeutic Triad: Implications for Designing Alternative IntravaginalP20GM125504 · NIGMS · UNIVERSITY OF LOUISVILLE · PI Shirin Ghods · 2018 to 2026
$24.4M
Role of oxidized linoleic acid metabolites in the pathogenesis of alcoholic liver diseaseP20GM113226 · NIGMS · UNIVERSITY OF LOUISVILLE · PI GHARE, SMITA S · 2016 to 2025
$24.1M
The Role of Nutrition in the Development/Progression of Alcohol-Induced Organ InjuryP50AA024337 · NIAAA · UNIVERSITY OF LOUISVILLE · PI CRAIG J. MCCLAIN · 2016 to 2026
$17.9M
University of Louisville Center for Integrative Environmental Health SciencesP30ES030283 · NIEHS · UNIVERSITY OF LOUISVILLE · PI Amanda Jo LeBlanc · 2020 to 2026
$10.0M
MOLECULAR ASPECTS OF ORAL PLAQUE FORMATIONR01DE012505 · NIDCR · UNIVERSITY OF WASHINGTON · PI Richard J Lamont, JAN S POTEMPA · 1998 to 2026
$9.5M
P GINGIVALIS INTERACTIONS WITH GINGIVAL EPITHELIAL CELLSR01DE011111 · NIDCR · UNIVERSITY OF WASHINGTON · PI HARIBABU BODDULURI, Richard J Lamont · 1995 to 2026
$5.4M
Probing Polymicrobial Synergy Using hihg Throughout GenomicsR01DE023193 · NIDCR · UNIVERSITY OF TEXAS AT AUSTIN · PI LAMONT, RICHARD J, WHITELEY, MARVIN · 2013 to 2023
$4.7M
P.gingivalis Interactions with Gingival Epithelial CellsR37DE011111 · NIDCR · UNIVERSITY OF LOUISVILLE · PI LAMONT, RICHARD J · 2009 to 2018
$3.6M
Polymicrobial Synergy between Treponema denticola and Porphyromonas gingivalisR00DE028346 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI MILLER, DANIEL PATRICK · 2020 to 2022
$747k
Polymicrobial Synergy between Treponema denticola and Porphyromonas gingivalisK99DE028346 · NIDCR · UNIVERSITY OF LOUISVILLE · PI MILLER, DANIEL PATRICK · 2018 to 2019
$214k
Regulation of ZEB1 by Porphyromonas gingivalis in gingival epithelial cellsF30DE028166 · NIDCR · UNIVERSITY OF LOUISVILLE · PI FITZSIMONDS, ZACKARY R · 2018 to 2021
$150k
Phosphotyrosine Signaling of Porphyromonas gingivalisF32DE026939 · NIDCR · UNIVERSITY OF LOUISVILLE · PI MILLER, DANIEL PATRICK · 2017 to 2018
$96k
NIAAA NIH HHS P50 AA024337NIDCR NIH HHS F30 DE028166NIDCR NIH HHS F32 DE026939NIDCR NIH HHS K99 DE028346NIDCR NIH HHS R00 DE028346NIDCR NIH HHS R01 DE011111NIDCR NIH HHS R01 DE012505NIDCR NIH HHS R01 DE023193NIDCR NIH HHS R37 DE011111NIEHS NIH HHS P30 ES030283NIGMS NIH HHS P20 GM113226NIGMS NIH HHS P20 GM125504NIH/NIDCR DE011111NIH/NIDCR DE012505NIH/NIDCR DE023193NIH/NIDCR DE026939NIH/NIDCR DE028166NIH/NIDCR DE028346
6 · The paper itself

Abstract

Phosphorylation of proteins is a key component of bacterial signaling systems that can control important functions such as community development and virulence. We report here the identification of a Ubiquitous bacterial Kinase (UbK) family member, designated UbK1, in the anaerobic periodontal pathogen, Porphyromonas gingivalis. UbK1 contains conserved SPT/S, Hanks-type HxDxYR, EW, and Walker A motifs, and a mutation analysis established the Walker A domain and the Hanks-type domain as required for both autophosphorylation and transphosphorylation. UbK1 autophosphorylates on the proximal serine in the SPT/S domain as well as the tyrosine residue within the HxDxYR domain and the tyrosine residue immediately proximal, indicating both serine/threonine and tyrosine specificity. The orphan two-component system response regulator (RR) RprY was phosphorylated on Y41 in the receiver domain by UbK1. The ubk1 gene is essential in P. gingivalis; however, overexpression of UbK1 showed that UbK1-mediated phosphorylation of RprY functions predominantly to augment its properties as a transcriptional enhancer. These results establish that P. gingivalis possesses an active UbK kinase in addition to a previously described Bacterial Tyrosine family kinase. The RR RprY is identified as the first transcriptional regulator controlled by a UbK enzyme.

Indexed as

Porphyromonas gingivalisSignal TransductionBacterial ProteinsPhosphorylationProtein-Tyrosine KinasesVirulenceBacterial ProteinsProtein-Tyrosine KinaseskinasePorphyromonas gingivalisresponse regulator

Identifiers

PMID34241965
PMCPMC8440399
OpenAlexW3181252492

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.