Evidence map›Paper›PMID 34240527›Full record

ArticleChembiochem : a European journal of chemical biology2021

Engineered RebH Halogenase Variants Demonstrating a Specificity Switch from Tryptophan towards Novel Indole Compounds.

Barindra Sana, Timothy Ho, Srinivasaraghavan Kannan, Ding Ke, Eunice H Y Li, Jayasree Seayad, Chandra S Verma, Hung A Duong, Farid J Ghadessy

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Barindra SanaDisease Intervention Technology Laboratory, Institute of Molecular and Cell Biology, Agency for Science Technology and Research (A*STAR), 8 A Biomedical Grove, #06-04/05 Neuros/Immunos, Singapore, 138648, Singapore.
Timothy HoInstitute of Chemical and Engineering Sciences, Agency for Science Technology And Research (A*STAR), 8 Biomedical Grove, Neuros, #07-01, Singapore, 138665, Singapore.
Srinivasaraghavan KannanBioinformatics Institute, Agency for Science Technology And Research (A*STAR), 30 Biopolis Street, #07-01 Matrix, Singapore, 138671, Singapore.
Ding KeDisease Intervention Technology Laboratory, Institute of Molecular and Cell Biology, Agency for Science Technology and Research (A*STAR), 8 A Biomedical Grove, #06-04/05 Neuros/Immunos, Singapore, 138648, Singapore.
Eunice H Y LiInstitute of Chemical and Engineering Sciences, Agency for Science Technology And Research (A*STAR), 8 Biomedical Grove, Neuros, #07-01, Singapore, 138665, Singapore.
Jayasree SeayadInstitute of Chemical and Engineering Sciences, Agency for Science Technology And Research (A*STAR), 8 Biomedical Grove, Neuros, #07-01, Singapore, 138665, Singapore.
Chandra S VermaBioinformatics Institute, Agency for Science Technology And Research (A*STAR), 30 Biopolis Street, #07-01 Matrix, Singapore, 138671, Singapore.
Hung A DuongInstitute of Chemical and Engineering Sciences, Agency for Science Technology And Research (A*STAR), 8 Biomedical Grove, Neuros, #07-01, Singapore, 138665, Singapore.
Farid J GhadessyDisease Intervention Technology Laboratory, Institute of Molecular and Cell Biology, Agency for Science Technology and Research (A*STAR), 8 A Biomedical Grove, #06-04/05 Neuros/Immunos, Singapore, 138648, Singapore.ORCID 0000-0001-8559-903X

Funding

GSK-EDB Singapore Partnership for Green and Sustainable ManufacturingNanyang Technological University
6 · The paper itself

Abstract

Activating industrially important aromatic hydrocarbons by installing halogen atoms is extremely important in organic synthesis and often improves the pharmacological properties of drug molecules. To this end, tryptophan halogenase enzymes are potentially valuable tools for regioselective halogenation of arenes, including various industrially important indole derivatives and similar scaffolds. Although endogenous enzymes show reasonable substrate scope towards indole compounds, their efficacy can often be improved by engineering. Using a structure-guided semi-rational mutagenesis approach, we have developed two RebH variants with expanded biocatalytic repertoires that can efficiently halogenate several novel indole substrates and produce important pharmaceutical intermediates. Interestingly, the engineered enzymes are completely inactive towards their natural substrate tryptophan in spite of their high tolerance to various functional groups in the indole ring. Computational modelling and molecular dynamics simulations provide mechanistic insights into the role of gatekeeper residues in the substrate binding site and the dramatic switch in substrate specificity when these are mutated.

Indexed as

ActinobacteriaBacterial ProteinsBinding SitesBiocatalysisHalogenationIndolesMolecular Dynamics SimulationMutagenesis, Site-DirectedOxidoreductasesSubstrate SpecificityTryptophanBacterial ProteinsIndolesOxidoreductasesTryptophantryptophan halogenasebiocatalysisdirected evolutionenzyme engineeringhalogenaseindoleRebH

Identifiers

PMID34240527
PMCPMC8518859

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.